Thank you very much Doug,
The codes worked very well. I was using the wrong command to correct the data.
My command was
mri_glmfit-sim --glmdir subc.glmdir --cache 1.3 pos --cwp 0.05 --3spaces
and for subcortical structures it must be
mri_glmfit-sim --glmdir subc.glmdir --grf 3 pos
Hello All,
I have a question about using the hippocampal subfield segmentation.
I've got the subfields from the structural image using recon-all and now
I want to use the subfields as ROIs in SPM. I've tried using mri_convert
to convert the .mgz files to .nii. This works but it doesn't place
