Dear Batool,
just small remark:
If you did not manually modified talairach registration in your v5.3 subjects,
I think it could be maybe beneficial to add -clean-tal to reinvoke talairach
registration. The registration atlas has been updated in V6 but without
-clean-tal option the registration
Thanks for the advice, bruce.
On Fri, Jan 27, 2017 at 4:17 PM, Bruce Fischl
wrote:
> probably you should just smooth the volume and save it as a new volume
> before running freeview
>
> cheers
> Bruce
> On Fri, 27 Jan 2017, Ruopeng Wang wrote:
>
>> Hi Peng,
>>
>> No, there is no command-line opti
Dear Ruopeng,
Thank you for the information.
best
Peng
On Fri, Jan 27, 2017 at 4:10 PM, Ruopeng Wang
wrote:
> Hi Peng,
>
> No, there is no command-line option for that. I will add it in future update.
>
> Best,
> Ruopeng
>
>> On Jan 27, 2017, at 9:49 AM, peng wrote:
>>
>> Dear Freesurfer ex
You are correct that the former is true.
Run recon-all -all on your existing subject directories after moving them
to a new v6 directory (with the new fsaverage, etc.) -- it will rerun all
the commands and use your brainmask.mgz deleted voxels, and your wm.mgz 255
voxels to correct the surfaces.
Dear freesurfer-users,
I want to run a qdec analysis, comparing cortical thickness between two
groups and using age and gender as nuisance factors. those factors are
included in my data.table but when i want to chose the design i can only
select gender as a discrete factor and not as a nuisance fa
