-- Forwarded message --
From: Martin Juneja
Date: Tue, Jan 31, 2017 at 4:38 PM
Subject: Cortical thickness from ROI in volume format
To: Freesurfer support list
Hi FreeSurfer experts,
My goal is to extract cortical thickness of several ROIs, which are in
volume space. I am foll
Hi Qiuyun - You can use orientLAS instead.
Hope this helps,
a.y
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Fan, Qiuyun
[qiuyun@mgh.harvard.edu]
Sent: Tuesday, January 31, 2017 6:03 PM
To: freesurfer@nmr
Hello Qiuyun,
What command did you call that complained about this? And what was the
error exactly?
On 01/31/2017 06:03 PM, Fan, Qiuyun wrote:
> Hi FreeSurfer experts,
>
>
>
> I figured 'flip4fsl' is missing from
> /usr/local/freesurfer/stable6/bin/. Can someone help to make a copy
> from /u
Hi FreeSurfer experts,
I figured 'flip4fsl' is missing from /usr/local/freesurfer/stable6/bin/. Can
someone help to make a copy from
/usr/local/freesurfer/stable5_3_0/bin/flip4fsl, if possible?
Thanks a lot!
Best,
Qiuyun
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Freesurfer mailing list
Douglas, thank you for the quick reply.
I am trying to figure out how can mri_fwhm help in this contect but can't
grasp it. I tried some of the example commands in the wiki, applied on a
XX.thickness file, but the outcome is NaN.
To clarify, what I am trying to do is detect local variations in th
You can smooth it. This would give you a gaussian kernel instead of the
box kernel that you describe. Set the fwhm to the radius you want
(mris_fwhm with --smoothonly option)
On 01/31/2017 04:48 PM, Dorian P. wrote:
> Hi Freesurfers,
>
> Thank you for the help you provide through this list.
>
>
Hello,
I'm reposting the following just in case anyone has any ideas. Any input would
be greatly appreciated!
Thank you very much for the suggestion. Here then are my attempts at putting
what you said into two sequential commands:
mri_vol2vol --targ $SUBJECTS_DIR/$subj/mri/norm.mgz \
Hi,
I would like to multiply two binary images (standard brain image with an
ROI) using fslmaths (or may be using some other way) command. Although both
are in standard space but image dimensions are different. I was wondering
if there is any way I can do that without any co-registration step.
Th
Hi Barbara – Thank you for your kind words. As you’ve read, if the output files
are generated, then you’re good to go. Bedpost does not differentiate between
longitudinal and cross-sectional data, so it’s run separately on each time
point’s …/dmri/ folder.
Best,
a.y
From:
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