Dear Freesurfer experts,
I'm trying to run a repeated measures anova as described here:
https://surfer.nmr.mgh.harvard.edu/fswiki/RepeatedMeasuresAnova
I have 40 subjects with 2 time points each, so it's quite a large matrix.
When running the mri_glmfit command I get the following error:
ERROR
Can anybody comment on the new dura_thresh flag? See below,
Many thanks,
Octavian.
-- Forwarded message --
From: Octavian Lie
Date: Sat, Mar 11, 2017 at 9:28 AM
Subject: -dura_thresh
To: "freesurfer@nmr.mgh.harvard.edu"
Dear All,
In FS6.0.0, this flag is added to manually ad
That command line works for me. What version of FS are you using? Is
that the only thing that gets printed to the terminal?
On 03/26/2017 02:40 PM, shi yao wang wrote:
> Dear FS experts:
> I am using aparcstats2table command to generate mean thickness of
> group subjects.
>
> my commands:
> apa
I don't think there is a maximum size. You would do the big analysis the
same way as the small.
On 03/26/2017 07:54 PM, Wang, Xin wrote:
>
> Hello, FreeSurfer Group,
>
> What is the maximal matrix size for glm_fit process?
>
> How to use FreeSurfer for group analyses of more than 2000 subjects,
Need command line and terminal output
On 03/27/2017 09:08 AM, Clara Kühn wrote:
> Dear Freesurfer experts,
>
> I'm trying to run a repeated measures anova as described here:
> https://surfer.nmr.mgh.harvard.edu/fswiki/RepeatedMeasuresAnova
>
> I have 40 subjects with 2 time points each, so it's
Hi Freesurfer experts,
I followed "dt_recon" pipeline
https://surfer.nmr.mgh.harvard.edu/fswiki/dt_recon to analyze DTI data. The
analysis ran smoothly without any issues.
I want to inquire waht is the correct method to move "fa-tal.nii" to MNI152_2mm
Is this command correct"?
mri_vol2vol --mov f
Hello,
We have a large number of subjects processed with the default settings of
recon-all. Unfortunately the presence of white matter creates problems when
creating the white matter surface. There are large hypo-intensities in the
white matter which badly distort the surfaces in multiple areas
Hi,
I am doing a project with the Desikan-Killiany atlas. After some ROI
analysis, I've got some values for each area. Now I want to display these
values in the brain 3D space. The values are Z statistic scores, so there
are both positive and negtive values (I want Z=0 to be in the middle of the
c
Dear FS experts:
We are measuring population based basal ganglia volume.
Except the absolute volume of BS, any other parameters could be a reliable
marker to reflect BS volume? such as ratio of total subcortical GM volume.
Thanks!
Lawrence
___
Freesurfer
so you want to color each parcellation unit with the same color on say the
fsaverage surface? I think people have done that, so hopefully someone else
has instructions for you
cheers
Bruce
On Mon, 27
Mar 2017, X K wrote:
Hi,
I am doing a project with the Desikan-Killiany atlas. After some
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