Dear experts,
I have completed recon-all with no errors. Now I would like to use the
'asegstats2table' command but I've received the error below. I would
appreciate any help in solving this problem. I am using FreeSurfer v6.0.0
on a Linux CentOS machine.
[TLA@CogmobCentOS MCI]$ asegstats2table --
Thanks doug. Do I need to include a flag in gtmseg to change the colour? Best. Paul
>From using isxconcat-sess to concatenate all of my subjects together, the
>command creates binary masks called masks.nii and mask.nii, masks.nii being
>all of the binary masks for each subject. Is this what I would use with
>--frame-mask?
Thanks,
Sadie
From:
yes
On 7/6/17 12:50 PM, Sadie Marvel wrote:
From using isxconcat-sess to concatenate all of my subjects together,
the command creates binary masks called masks.nii and mask.nii,
masks.nii being all of the binary masks for each subject. Is this what
I would use with --frame-mask?
Thanks,
Hi all:
We ran FreeSurfer's recon sequence of anatomy files that had already been
aligned to the MNI template - so spatially normalized. We're doing all of our
processing in AFNI and the resulting segmentation output files open in AFNI's
orig space, not in tlrc space. So basically we can't ove
It is not only the atlas but the tools that are different.
Lilla
On Wed, 5 Jul 2017, Das S. wrote:
> Dear Lilla,
> In that case you mean if I have my own atlas specific to neonates then I can
> follow these steps of auto recon.
> If you give me little more details will be easy for me to unders
