[Freesurfer] mri_cvs_register error

2017-10-21 Thread miracle ozzoude
Hello, I am trying to run mri_cvs_register on a subject and I got an error (please see attached log file). Below was the command I used. Thank you. mri_cvs_register --mov 01091p --mni --step1 --step2 --step3 --outdir /Users/MiracleOz/Documents/improvervsdeclinermri/01091p/cvs --asegfname aparc+as

Re: [Freesurfer] Recon-all for Allen Brain Institute T1 image

2017-10-21 Thread Melanie Ganz
Yes, I will write an email out once they are done.On Oct 20, 2017 10:49 PM, Sean Froudist Walsh wrote:That would be great Melanie, thank you very much. And thanks to Bruce and Satra for the quick responses.How will I be able to find the processed files? Will it be announced somehow?Best wishes,Sea

Re: [Freesurfer] seek help

2017-10-21 Thread Bruce Fischl
sorry, I don't think a .dset file is ours, unless it is actually a .annot file. Try loading the surface into freeview then see if the .dset will load as an annotation on top of it cheers Bruce On Sat, 21 Oct 2017, 辛雨萌 wrote: Dear FreeSurfer Experts, I'm a beginner in cognitive neuronsci

[Freesurfer] Help with extraction of cortical thickness from ROI and creation of mask.

2017-10-21 Thread Dennis M. Hedderich
Dear Freesurfer Team, I built a GLM, did a 2 sample t-test and found significant differences in cortical thickness in the right middle temporal gyrus between two groups. Now, I would like to kindly ask for your help with two problems that I am facing: 1) for further correlation analyses in SPSS, I