Hi Freesurfer experts,
I am wondering if it is possible to remove the original labels after
extending the parcellation by 2mm into the WM for tractography? I don't
wish to have tractography run on both sets of labels considering the
algorithm would take into account the streamlines terminating at
Thanks so much! Docker had 2 GB of ram, now it has 10...we'll see if that
makes it happy.
-Dianne
On Sun, Feb 4, 2018 at 10:52 AM, Chris Gorgolewski <
krzysztof.gorgolew...@gmail.com> wrote:
> This looks like a memory issue to me as indicated bu those two lines:
>
> /opt/freesurfer/bin/reconbatc
This looks like a memory issue to me as indicated bu those two lines:
/opt/freesurfer/bin/reconbatchjobs: line 81: 4014 Killed
exec $JOB >> $LOG 2>&1
/opt/freesurfer/bin/reconbatchjobs: line 81: 4017 Killed
exec $JOB >> $LOG 2>&1
You can adjust how much memory of your host machine will be acces
Hello Dr. Greve,
The analysis.info file is below. I should also say that, when I am trying to
create new analysis and contrast files, while creating the .config file for
contrast, th system gives the same error saying that it cannot enter the file.
# FSBUILD freesurfer-Linux-centos6_x86_64-stab
This is not expected.
You would need to provide more details (recon-all.log) for anyone to be
able to help you. It might be also worth googling the specific error
message before hand - it could be that someone else run into this before.
Best,
Chris
On Sat, Feb 3, 2018 at 7:55 PM, Dianne Patterso
I would like to find where the functional connectivity is correlated to
VARIABLE 1 regressing out the VARIABLE 2.
How I should set my contrast.mtx?
Thanks
Stefano
> Il 3 febbraio 2018 alle 19.57 Douglas Greve ha
> scritto:
>
>
>
>
> On 2/2/18 7:47 AM, std...@virgilio.it mailto:std..
I have run:
1)
mris_preproc --fsgd GROUP1.fsgd --target fsaverage --hemi rh --meas thickness
--out rh.GROUP1.thickness.00.mgh
mri_surf2surf --hemi rh --s fsaverage --sval rh.GROUP1.thickness.00.mgh --fwhm
10 --cortex --tval rh.GROUP1.thickness.10B.mgh
2)
mri_glmfit --y ces.nii.gz --wls cesvar
Thanks.what do I do if I would like to maintain the effect of "main" in the points 2 and 3.Best regardsStefano
--- Begin Message ---
On 2/2/18 7:47 AM, std...@virgilio.it wrote:
Hi list,
in reference to One Group (One Factor), Two Covariates
https://surfer.nmr.mgh.harvard.edu/fswiki/Fsgdf1