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Hello,
I downloaded the Freesurfer ver 5.3.0 and installed it on Mac OS.
I run *"recon-all -s -local GI" *for my subject..
And I run *Matlab Script* about "*Start up" , "make_outer_surface",
"make_roi_paths" , "find correspoding center" *as follows:
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Hi, probably you need to add MATLAB path to Freesurfer's $PATH variable.
The following link may help:
http://www.manuelschutze.com/?p=297
On 18 May 2018 at 12:02, subin oh wrote:
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> Hello,
>
> I downloaded
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Dear all,
thanks for building and maintaining freesurfer. It's really a great tool.
My question is very simple: I have three Freesurfer Atlas files (lh and
rh curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs and
RB_all_2008-03-26.gca) and
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Hi All,
I have 1x1x3 cubic mm T2 and 1x1x1 cubic mm FLAIR, in addition to 1x1x1
cubic mm MPRAGE. Can you please let me know whether I should use only T1 or
should I use one of the additional seq. for hippocampal subfield
segmentation ?
cheers
Nik
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Hello, experts
I have a problem with the results of mris_make_surfaces to pial and white
matter surfaces.
I am working with high resolution (0.75x0.75x0.75) monkey images,
mris_makes_surfaces finish without errors but the surfaces have notches, I
atta
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I think it’s an empirical question. I would try both on a bunch of subjects and
then decide. But my gut feeling is that T1+T2 will do best.
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Translational Imaging Group
University Col
Hi Tim
the gcs files are on the surface, so it is not so trivial.If you are
looking for MNI coords probably the easiest thing to do is use the .annot
files that we distribute with fsaverage.
For the .gca, you can convert a "frame" of it to a nifti volume via:
mri_convert file.gca#0 means.nii.g
Hi S.V
they are all volumes I think. The definitions can be found in various
Kennedy/Caviness papers (which we cite in our original 2002 aseg paper in
Neuron).
cheers
Bruce
On Fri, 18 May 2018, SJ JV wrote:
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Hi
Can someone please give the defi