[Freesurfer] longitudinal TRACULA -prep error

External Email - Use Caution Hello, I'm running into an error in the longitudinal TRACULA pipeline that I'm not sure how to resolve. I saw this error in the message board but there was no resolution to the problem so I thought I'd ask again. I've successfully run the recon-all

Re: [Freesurfer] Reporting Cohen's D for a significant cluster

This is the behavior in 6.0. It has been fixed in the deev version. I think it is possible to download just the dev version of freeview. Otherwise, you could do your computation in matlab with c = MRIread('cohensd.mgh'); c.vol(vertexno+1) On 09/26/2018 02:34 PM, Maksimovskiy, Arkadiy wrote: >

Re: [Freesurfer] tksurfer-sess frame time course question

answwers below On 09/27/2018 05:44 AM, 伊藤匠吾 wrote: > > > Hello, > > I am new to FreeSurfer. > > I conducted an experiment with event-related design. > There were eight non-fixation conditions. In every trial, a simple > stimulus was presented for about 1.5 sec, and the subject made a > button

Re: [Freesurfer] Freeview error

Hi, this should be fixed now in the OSX dev distribution. best, Andrew From: on behalf of "Md. Mamun Al-Amin" Reply-To: FS Help Date: Saturday, September 22, 2018 at 1:15 AM To: FS Help Subject: [Freesurfer] Freeview error External Email - Use Caution Dear Experts I have been

Re: [Freesurfer] Best way to update Freeview

I forgot to mention, if you’re replacing freeview in a stable osx freesurfer release, then you must also remove the line "source $FREESURFER_HOME/sources.csh" from the $FREESURFER_HOME/bin/freeview script best, Andrew From: on behalf of "Hoopes, Andrew" Reply-To: FS Help Date: Thursday,

Re: [Freesurfer] Best way to update Freeview

Hi Arkadiy, this should be fixed now. best, Andrew From: on behalf of "Maksimovskiy, Arkadiy" Reply-To: FS Help Date: Wednesday, September 26, 2018 at 6:01 PM To: FS Help Subject: Re: [Freesurfer] Best way to update Freeview Hi everyone, I was able to download Freeview- the link now

Re: [Freesurfer] ERROR: dimension mismatch between X and contrast

You have 3 groups and 2 covariates, so you will have 3*(2+1)=9 regressors, in this order ADHD-offset COM-offset TD-offset ADHD-Age COM-Age TD-AGE ADHC-IQ COM-IQ TD-IQ You will need to have a single value for each regressor in your contrast matrix, meaning that you should have 9 values. You have

[Freesurfer] ERROR: dimension mismatch between X and contrast

External Email - Use Caution Dear FreeSurfer experts, I get this error message when running group analysis on cortical thickness using glmfit: ERROR: dimension mismatch between X and contrast Contrasts/ADHD_COM_TD_age_IQ.mtx X has 9 cols, C has 10 cols Please find attached the

[Freesurfer] tksurfer-sess frame time course question

External Email - Use Caution Hello, I am new to FreeSurfer. I conducted an experiment with event-related design. There were eight non-fixation conditions. In every trial, a simple stimulus was presented for about 1.5 sec, and the subject made a button press. I did the following

Re: [Freesurfer] amygdala segmentation using additional scan error

External Email - Use Caution Dear Eugenio, it works:) thanks for your help! it was really helpful! have a nice day~ Jinyoung 2018년 9월 11일 (화) 오전 2:07, Iglesias Gonzalez, Eugenio 님이 작성: > External Email - Use Caution > > Hi Jinyoung > Sorry for the slow response but I'm