Re: [Freesurfer] cannot stat volumesAmygdala.txt

2018-09-30 Thread Iglesias Gonzalez, Eugenio
External Email - Use Caution Hi again, John, The amygdala segmentation only because available in development versions newer than FreeSurfer 6.0. Please try again with the latest dev. You don’t need to re-run recon-all; you can run the hippo+amygdala volume on subjects processed w

Re: [Freesurfer] cannot stat volumesAmygdala.txt

2018-09-30 Thread John Papatriantafyllou
External Email - Use Caution Hi it is freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c John On Sun, Sep 30, 2018 at 2:50 PM Iglesias Gonzalez, Eugenio < e.igles...@ucl.ac.uk> wrote: > External Email - Use Caution > > Hi Jon, > > What exact version are you using

Re: [Freesurfer] amygdala segmentation atlas influence

2018-09-30 Thread Iglesias Gonzalez, Eugenio
External Email - Use Caution Dear Raj, A few years ago, we published a paper on how Monte Carlo sampling could be used to quantify this. Unfortunately, the method was incredibly slow and difficult to tune, and the performance gain was tiny, so we never put it in FreeSurfer. But

Re: [Freesurfer] cannot stat volumesAmygdala.txt

2018-09-30 Thread Iglesias Gonzalez, Eugenio
External Email - Use Caution Hi Jon, What exact version are you using? Is it a recent development version? Cheers, /Eugenio -- Juan Eugenio Iglesias ERC Senior Research Fellow Centre for Medical Image Computing (CMIC) University College London http://www.jeiglesias.com http://cmic

[Freesurfer] cannot stat volumesAmygdala.txt

2018-09-30 Thread John Papatriantafyllou
External Email - Use Caution dear Freesurfers, after processing hippocampal subfields i cannot get amygdala stats. Instead i get the following massage *cannot stat volumesAmygdala.txt* Any suggestions? John PS i run freesurfer under neurodebian system on pc with windows 10 cd