[Freesurfer] very bad result using "mris_ca_train" and "mris_ca_label"

2018-10-06 Thread Maedeh Khalilian
External Email - Use Caution Dear Freesurfer experts, I am using "mris_divide_parcellation" in order to increase the region numbers of Freesurfer parcellation output using "recon-all". e.g i have a 200-region parcellation.Now i wanna use "mris_ca_train" and this .annot file as

[Freesurfer] FreeSurfer update

2018-10-06 Thread Dongsheng Wu
External Email - Use Caution Dear experts, Could the longitudinal statistics be processed in the version 5.3?How to update the version 5.3 to 6.0? Best regards, WU___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://m

[Freesurfer] Extract individual vertex thickness values from cortical parcellations

2018-10-06 Thread lindsay hanford
External Email - Use Caution Hello Freesurfer Community, I am looking for a way to extract thickness values at the level of each vertex from Freesurfer atlas-based parcellated regions (aparc.annot), or more generally lobes. Is this possible? Using mri_segstats I know it is possib

Re: [Freesurfer] FreeSurfer update

2018-10-06 Thread ts+ml
External Email - Use Caution I you want to get FreeSurfer 6, just download it from the website: https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall Maybe keep a copy of the installer around for the next machine you want to install it on, as the download is quite lar