Re: [Freesurfer] cortical thickness calculation based on hammersmith segmentation

2019-01-27 Thread Bruce Fischl
Hi Boris vol2surf samples a scalar overlay in the volume to be a scalar overlay on the surface. This is NOT the same as a surface itself - it contains no geometry or topology information. Try giving freeview a surface (which I guess you have for subject 0021). Something like freeview -f \ 00

Re: [Freesurfer] cortical thickness calculation based on hammersmith segmentation

2019-01-27 Thread Boris Rauchmann
External Email - Use Caution Hi, I used the following commands: mri_vol2surf —src .../Hammers_mith_atlas_n30r83_SPM5.nii --out lhHammers_mith_atlas_n30r83_SPM5surf.mgh --out_type mgh --hemi lh --regheader 0021 srcvol = .../Hammers_mith_atlas_n30r83_SPM5.nii srcreg unspecifie