Re: [Freesurfer] Errors in white matter surfaces from scan collected on 3T Siemens Skyra scanner at .6 mm resolution

good to hear! On 2/5/19 12:19 PM, Lalonde, Francois (NIH/NIMH) [E] wrote: > External Email - Use Caution > > Hi Doug, > > Sorry for the delay in getting back to you. I wanted feedback from the other > members of the studies. We all agree that the patch worked wonderfully. > > Thanks! >

Re: [Freesurfer] Errors in white matter surfaces from scan collected on 3T Siemens Skyra scanner at .6 mm resolution

External Email - Use Caution Hi Doug, Sorry for the delay in getting back to you. I wanted feedback from the other members of the studies. We all agree that the patch worked wonderfully. Thanks! François On 1/24/19, 7:34 PM, "Greve, Douglas N.,Ph.D." wrote: The dev ver

[Freesurfer] Find the fsaverage voxel that corresponds to a voxel in the raw Nifti file

External Email - Use Caution Dear FreeSurfer experts, I have a raw nifti file created from a stack of DICOM scanner images, let's say it has dimension (162, 172, 188) along the 3 axes. I have also pre-processed this subject in FreeSurfer and have the resulting volume files (e.g

[Freesurfer] Extracting anatomical locations for a set of RAS coordinates

External Email - Use Caution Good afternoon Is there is way to automatically extract the anatomical locations corresponding to a set of RAS coordinates using Freesurfer's atlas? I have a set of 200 points and I am trying to get their anatomical labels automatically. Thank you Spa

Re: [Freesurfer] Mismatch between ?h.BA.thresh.annot and ?h.entorhinal.thresh.label/?h.perirhinal.thresh.label

Hi Yi Leng, there’s a recon-all patch for 6.0 at https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/recon-all. You can update it with: cd ${FREESURFER_HOME}/bin mv recon-all recon-all.backup curl https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/recon-all -o re