not sure if this ever got answered. The gcs is an atlas we use to label
individual subjects. If you have run your subject through recon-all there
should be *.annot files in the subject's label dir that correspond to the
individual subject parcellations. You can read those in to matlab or python
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Hi, my concern is the mri_aparc2aseg command line.
In summary, I have done:
mri_surf2surf --srcsubject fsaverage5 --trgsubject subj --hemi rh --sval-annot
/Applications/freesurfer/1000subjects_reference/Yeo_JNeurophysiol11_SplitLabels/fsaverage5/labe
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Hello,
I am struggling to run mri_glmfit because various flags seem to be going
unrecognized.
This is my command:
mri_glmfit —-table V1_lh_stats.txt —-fsgd glm/gender_age.fsgd dods —-C
lh-Avg-thickness-age-Cor.mtx —-surf fsaverage lh —-cortex --
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Hello,
I am trying to use the segmentHA_T1_long.sh command on my longitudinal
data. I have already run all the previous steps and have even successfully
run longHippoSubfieldsT1.sh. However I want to use the segmentHA version to
get my hippocampal segm
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Sorry,
I realized I did not have the path to freesurfer in my script set to
the dev version. It was set to the FS6.0 version.
Best,
*Daniel Callow*
*PhD Student, Neuroscience and Cognitive Science*
Exercise for Brain Health Lab
University of Maryland
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Dear all,
I was asked to provide a power calculation of my group comparison
results on cortical thickness, so I extracted all clusters with significance in
CT into SPSS. but I found the cluster value of CT is not significant in SPSS
based on
