Re: [Freesurfer] Doubts in hippocampal subfields labeling {Disarmed}

External Email - Use Caution Thanks, Antonin. The ASEG has definitely oversegmented the hippo. Those large regions were ASEG and the subfield module disagree are mostly partial voluming of the lateral ventricle and the cerebral white matter or the fimbria, and are thus NOT

[Freesurfer] How to Divide the Surface Parcellations of the Brain

External Email - Use Caution Dear Bruce, All the outputs are .nii and .gii I do not know if it is possible to convert it to the annotation! By the way, what is needed for creation of the annotation file? I mean what information, it needs? Regards Mahshid

Re: [Freesurfer] Freesurfer Digest, Vol 185, Issue 11

hshid -- next part -- An HTML attachment was scrubbed... URL: http://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/attachments/20190708/24c57303/attachment-0001.html -- Message: 3 Date: Sun, 7 Jul 2019 18:27:49 -0400 (EDT) From: Bruce Fischl Subject: Re

Re: [Freesurfer] recon-all error: Correcting defect

External Email - Use Caution Dear Bram, Thanks for your help, yes I tried to fix this issue following Bruce´s suggestions and everything worked fine. I manually filled the brain lesions in the wm.mgz and now the recon-all did not stop in the correcting defect. Best regards, El

Re: [Freesurfer] recon-all error: Correcting defect

Hi Miguel! I'll be happy to help with your issue, but I'm having trouble finding your subject's directory on our server. Could you please try and upload the data via FTP, again? Also, have you tried either of Bruce's suggestions? Thanks, Bram Bram R. Diamond, BSc Research Technician II

Re: [Freesurfer] Skull Strip

Hi, unless you build the binaries yourself, I believe the stable freesurfer versions only support cuda 5. However, cuda support has been completely removed in the current development version. The dev version that you’re referencing is from 2016. Andrew From: on behalf of Admin

Re: [Freesurfer] make_average_subject error: could not load norm volume from (null)

Can you send the full terminal output of make_average_subject? There should also be some log files (make_average_volume.log and make_average_surface.log) in the average subject that would be helpful On 7/4/2019 4:36 AM, Mads Jensen wrote: External Email - Use Caution HI FreeSurfer

[Freesurfer] Postdoctoral Position opening at the University of Pittsburgh in neuroimaging of mood disorders

External Email - Use Caution Candidates are being considered for a post-doctoral associate position in the Anticipation, Cognition and Emotion lab ( www.ace.pitt.edu ) at the University of Pittsburgh (http://www.pitt.edu) to work with Dr. Anna Manelis and her team. A successful

Re: [Freesurfer] Freesurfer Digest, Vol 185, Issue 9

External Email - Use Caution Thanks, Tim for your reply. No, there is only "lh.pial" file exists not 'lh.pial_lgi. What might be the problem? Any help would be appreciated Thanks & regards -Korann On Sat, Jul 6, 2019 at 9:30 PM wrote: > Send Freesurfer mailing list

[Freesurfer] Skull Strip

External Email - Use Caution Dear Freesurfer group： just tried recon-all with the -use-gpu flag from the current development version of freesurfer (freesurfer-Linux-centos6_x86_64-dev-20161123-bb356e0), but it fail with the message that is cannot open libcudart.so.5.0. I