Re: [Freesurfer] Recon-all Error in output - ERROR: nu_correct

External Email - Use Caution Hello, Even though this is an old post, the entire solution to this has not been posted and I couldn’t find it anywhere. I hit this error, and I had to (1) make sure the SUBJECT_DIR environment variable was pointing to a directory that is not on the

[Freesurfer] UC San Diego - Postdoctoral Research Fellow Position

External Email - Use Caution Hello Freesurfer Community, University of California, San Diego Research Fellow Position Postdoctoral research fellow position in genomic studies of neuropsychiatric disorders at University of California, San Diego Dr. Chi-Hua Chen's laboratory is

[Freesurfer] multimodal analysis (pet and cortical thickness relationship) using --pvr

External Email - Use Caution Hello Experts, I am performing an analysis looking at the relationship between amyloid uptake and cortical thickness using --pvr flag in mri_glmfit. I've 2 groups and 2 variables (age and education). I want to run a within group analysis while regressi

Re: [Freesurfer] Failure of mri_robust_template in fmriprep

sure, but them on our ftp site and we'll see if we can replicate it. I'll also cc Martin so he can comment cheers Bruce On Wed, 31 Jul 2019, Frederick, Blaise B. wrote: Ø  Hi Blaise Ø    * I can't even find an exit(-9) in the code. If you can track down and send us the inputs to mri

Re: [Freesurfer] Failure of mri_robust_template in fmriprep

Ø Hi Blaise Ø * I can't even find an exit(-9) in the code. If you can track down and send us the inputs to mri_robust_template I can try to replicate it locally. Or wait for Martin to comment :) Ø Ø Bruce * Well that’s a bit disturbing… Could this be a signed vs. unsigned integer

Re: [Freesurfer] Running FSL randomise on FS cortical thickness data {Disarmed}

External Email - Use Caution Hi, It's possible to analyse longitudinal designs with PALM. Some mild assumptions must hold, and those assumptions are different than those of an LME model. PALM doesn't assume normality, doesn't require a specified form for the dependence structure,

Re: [Freesurfer] FSL questions

Thank you, Douglas. Best, Weiqi From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Greve, Douglas N.,Ph.D. Sent: Tuesday, July 30, 2019 3:58:20 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] FSL questions I don't know anything about

[Freesurfer] make_average_subject error

External Email - Use Caution Dear all, I have seen this error mentioned several times on the list but I have never seen a solution posted. It is claimed that there is a patch and a README that explains the patch at: https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-pat