Re: [Freesurfer] selxavg3-sess

2019-10-02 Thread Greve, Douglas N.,Ph.D.
It is having some problems unzipping a nifti file. Does it work on other runs/sessions/subjects? If so, then there might be something wrong with that file. Alternative, check /var/volders/v3 to see if the disk is filling up. On 10/1/2019 1:43 PM, Sanati Monfared, Shamsi wrote: External

Re: [Freesurfer] Freesurfer three groups: group A vs C power.

2019-10-02 Thread Greve, Douglas N.,Ph.D.
The DOF is determined only from the design matrix as DOF = #RowsX - #ColsX So, it would be 9 regressors, not 6 On 9/26/2019 12:31 PM, cody samth wrote: External Email - Use Caution Hi I have a question regarding how freesurfer calculates the degrees of freedom when you have three groups

Re: [Freesurfer] Question about using tkregisterfv to check registration

2019-10-02 Thread Greve, Douglas N.,Ph.D.
Can you run tkregisterfv --debug --mov pet.nii.gz --targ T1.nii --reg pet_T1.reg.lta and send the terminal output? On 10/2/2019 3:58 PM, Vicky Yang wrote: External Email - Use Caution Dear Freesurfer experts, I used mri_coreg to register my pet data to T1 like below: mri_core

Re: [Freesurfer] username and password

2019-10-02 Thread fsbuild
External Email - Use Caution OK, thanks for letting us know.   We will look into when/how that redirect started to happen.  Just to clarify though, you do not need to login to the Martinos center to download the freesurfer release binaries or source code, i.e., using that form w

[Freesurfer] Question about using tkregisterfv to check registration

2019-10-02 Thread Vicky Yang
External Email - Use Caution Dear Freesurfer experts, I used mri_coreg to register my pet data to T1 like below: mri_coreg --mov pet.nii.gz --ref T1.nii --reg pet_T1.reg.lta After coregistering, I checked the registration using tkregisterfv like below: tkreg

Re: [Freesurfer] username and password

2019-10-02 Thread Rachel S
External Email - Use Caution Hi, I have the same problem. It directs me to the Martinos Centre Login, which never happened before. I've subscribed to the maillist. Best, Rachel fsbuild 于2019年10月1日周二 下午4:09写道: > External Email - Use Caution > > Hello Takashi, > > Did yo

Re: [Freesurfer] Command line tksurfer: use of the color scale "Color Wheel" {Disarmed} {Disarmed}

2019-10-02 Thread Caspar M. Schwiedrzik
External Email - Use Caution following up on this: how do we display complex values from a retinotopy analysis in freeview? thanks! caspar Am Fr., 20. Sept. 2019 um 14:22 Uhr schrieb Caspar M. Schwiedrzik < cschwie...@rockefeller.edu>: > Hi Ruopeng and Doug, > thanks for the hin