[Freesurfer] nuisance factors

External Email - Use Caution Dear FreeSurfer Developers, I am trying to design a matrix in order to run a group comparison analysis and I would like to verify if I am following the right steps. I have read a lot of things in the forum, but I got confused regarding how to treat

Re: [Freesurfer] (no subject)

External Email - Use Caution Thanks alot lilla. Nader On Tue, 29 Oct 2019, 19:37 Lilla Zollei > Our default setting to run mrri_cvs_register on our cluster is to use > 35gb. > Lilla > > On Tue, 29 Oct 2019, Nader Razmara wrote: > > > > > Hi expertsI use freesurfer vm 5.3 on oracl

Re: [Freesurfer] (no subject)

Our default setting to run mrri_cvs_register on our cluster is to use 35gb. Lilla On Tue, 29 Oct 2019, Nader Razmara wrote: Hi expertsI use freesurfer vm 5.3 on oracle vb 6 with 8 GB ram. When i use mri_cvs_register as: mri_cvs_register --mov subjid --mni or  mri_cvs_register --mov subjid -

[Freesurfer] (no subject)

External Email - Use Caution Hi experts I use freesurfer vm 5.3 on oracle vb 6 with 8 GB ram. When i use mri_cvs_register as: mri_cvs_register --mov subjid --mni or mri_cvs_register --mov subjid --template subjid in both cases it stops in step 2 by diffrent errors. I asked zollei t

Re: [Freesurfer] [mri_cvs_register] Transform is zero

Hi Stefano, If you suspect that the error is due to the small deformation values, can you try to use -odt float to specify the output data format? Lilla On Tue, 29 Oct 2019, Stefano Zappala wrote: Hi there, I am having problem reading the final_CVSmorph_toS131032017_Supine.m3z transfor

[Freesurfer] question about qdec 'Generate Stats Data Tables'

External Email - Use Caution Hello, We had a problem when using QDEC for group analysis. After generating relevant files, I press 'Load Data Tabel' button to load my file 'qdec.tabel.dat'. But when I press the 'Generate Stats Data Tables' button, a popup window shows an error

Re: [Freesurfer] Discrepancy between thresholded surface and cluster labels

External Email - Use Caution Hm, I think I replied last Wednesday; anyway, below is the message again. Best regards, Kersten Forwarded Message From: "Diers, Kersten /DZNE" mailto:%22Diers,%20Kersten%20/dzne%22%20%3ckersten.di...@dzne.de%3e>> Reply-to: Freesur