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Thank you, Dr. Greve
I checked all about your comment.
I have questions more.
1. I found that volumes or counts in gtm.stats.dat are for native PET space.
If co-registered PET onto corresponding MRI(i.e. MRI space) is available
using rbv.nii.gz from m
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Post Doctoral Position: Neuroimaging
The Human Behavioral Pharmacology Laboratory in the Department of Psychiatry
and Behavioral Neuroscience at the University of Chicago is seeking a
post-doctoral fellow with expertise in fMRI study design and analy
sorry for the delay. You will have to use mri_label2label to map the
label from the fsaverage space to the individual space
On 1/31/2020 10:01 PM, Tien Pham wrote:
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Can you read my message?
I used longitudinal pipeline for my data set with two time points a
Do you have a group of subjects that you want to use as an average? If
so, you can just map all their thickness maps to your patient subject with
mris_preproc --target patientsubjectname [then usual arguments]
Compute the mean with
mri_concat outputofmris_preproc.mgz --mean --o groupmean.mgz
Yo
See this page
On 2/3/2020 11:11 AM, Noah Markowitz wrote:
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>
> Hi all,
>
> I’m trying to get the coordinates for specifice vertices of an inflated
> surface. I noticed there’s a difference between surfaceRAS and vertex
> coordinates (though I don’t understa
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Hello Freesurfer Team,
Would you be so kind to provide freesurfer steps to implement warping fsaverage
mean thickness data on individual subject inflated brains ?
I am using expert opts to disable cortical thickness restriction, and set
mris_thickne
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Hi all,
I’m trying to get the coordinates for specifice vertices of an inflated
surface. I noticed there’s a difference between surfaceRAS and vertex
coordinates (though I don’t understand it much).
After getting the index of the specific vertex of
Hi Tim
if you upload the input files to mri_deface and the full command line
I'll take a look. Is this the dev version you are using?
cheers
Bruce
On Mon, 3 Feb 2020,
Tim Schäfer wrote:
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Dear FreeSurfer experts,
I am running mri_deface for all relevant
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Dear FreeSurfer experts,
I am running mri_deface for all relevant volume files of more than 700 subjects
(~3500 MGZ files in total). For roughly 10% of the files, the command fails,
i.e., it stops with non-zero exit code and does not produce a result
