Re: [Freesurfer] freeview slow/choppy

2020-02-10 Thread Octavian Lie
External Email - Use Caution Hello Andrew, I am using freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Thank you, Octavian On Mon, Feb 10, 2020 at 9:19 AM Hoopes, Andrew wrote: > > Hi Octavian, > what freesurfer version are you using? > Andrew > >

[Freesurfer] make average subject/ highres fMRI data

2020-02-10 Thread Nasiriavanaki, Zahra
Dear Freesurfer experts Hi I got an error when I was trying to make an average subject. I attached the log file. I appreciate if you could please let me know what the problem is. make_average_subject --out avgsubject --subjects subj1 subj2 subj 3 labeling Slice relabeling unlikely voxels in

[Freesurfer] Three qdec analyses, different results

2020-02-10 Thread Wang, Lily
Hi Freesurfer Team, I made a qdec table with columns fsid, disease status (control and diseased), age, df, db, dtotal (which are three continuous psychological test scores). I performed one analysis in qdec with disease status as the discrete factor and each of the three test scores as the

[Freesurfer] Conversion between lta file type

2020-02-10 Thread Christian O'Reilly, Dr
External Email - Use Caution Hi, How can I convert a LTA file type 0 (LINEAR_VOX_TO_VOX) to a type 1 (LINEAR_RAS_TO_RAS)? Also, given a volume x.nii.gz and a file y.lta, how do I obtaijn z.nii.gz as the original volume x.nii.gz transformed according to y.lta? I tried with

Re: [Freesurfer] freeview slow/choppy

2020-02-10 Thread Hoopes, Andrew
Hi Octavian, what freesurfer version are you using? Andrew From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Octavian Lie Sent: Monday, February 10, 2020 9:32 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] freeview slow/choppy

[Freesurfer] freeview slow/choppy

2020-02-10 Thread Octavian Lie
External Email - Use Caution Dear All, I recently changed from ubuntu 16.04 to 18.04 LTS, then reinstalled Freesurfer. As opposed to prior behavior, freeview image manipulation (mainly mouse-based rotations) are exceedingly choppy and slow. The screen briefly freezes after moving

Re: [Freesurfer] Using Buckner Cerebellar Parcellation

2020-02-10 Thread Davide Momi
External Email - Use Caution Thanks Thomas, it worked perfectly Best Il giorno dom 9 feb 2020 alle ore 09:20 Thomas Yeo ha scritto: > External Email - Use Caution > > Hi Davide, > > Here's a previous email I sent to the list about warping Choi's > striatum atlas to