[Freesurfer] Issue with BBR and Applying CVS Warps to Diffusion Data

External Email - Use Caution Dear All, I have used CVS to align around 180 scans to a single, representative subject. I have then used BBR to align the mean b0 image to register the diffusion data to the native space T1 and then apply CVS warps; however, the resulting aligned

Re: [Freesurfer] Setting up Freeview on Ubuntu Linux 18.04: freeview can't find libpng12

External Email - Use Caution You also see a list of packages to install on the freesurfer wiki pages under, https://surfer.nmr.mgh.harvard.edu/fswiki/BuildRequirements - R. On Feb 26, 2020, at 12:03, Tim Schäfer wrote:   External Email - Use Caution    H

[Freesurfer] field inhomogeneities and eddy current correction evaluation

External Email - Use Caution Hello all, how can I evaluate the field inhomogeneities and eddy current correction I performed on my DWI images? Does any metric exist to do so? Thanks a lot in advance Regards Adam ___ Freesurfer mailing

Re: [Freesurfer] Setting up Freeview on Ubuntu Linux 18.04: freeview can't find libpng12

External Email - Use Caution Hi Tim, try: wget http://mirrors.kernel.org/ubuntu/pool/main/libp/libpng/libpng12-0_1.2.54-1ubuntu1_amd64.deb sudo dpkg -i libpng12-0_1.2.54-1ubuntu1_amd64.deb More details at https://www.xsmd.org/brain/2019/06/19/freeview-libpng12-so-0-missing-un

[Freesurfer] Setting up Freeview on Ubuntu Linux 18.04: freeview can't find libpng12

External Email - Use Caution HI, I'm setting up freeview on a Linux 18.04 system and running through the instructions in https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall I got through to Example 4: "View the output volumes..." and got the error below. harritp1@TPHT

Re: [Freesurfer] make_average_subject

External Email - Use Caution As addendum to my message. The full terminal output: Reading surface /Users/benine/Desktop/PVS_validation_cohort/MyelinMS_MRI_export/Freesurfer_output/REMY001_M0//surf/lh.white Loading annotations from /Users/benine/Desktop/PVS_validation_cohort/My

[Freesurfer] make_average_subject

External Email - Use Caution Dear Freesurfer experts, I want to create a new standard template from my study population. For this, I thought about using make_average_subject. Thus, I run: make_average_subject --out avgsubject --subjects REMY001 REMY002 REMY003 I get an error mess