On 3/9/20 5:53 PM, Hengameh Marzbani wrote:
>
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> Hello Freesurfer developers,
> 1- I want to extract the uncorrected clusters from the uncorrected
> significance maps obtained from mri_glmfit for structural data (to illustrate
> cluster, size, location, a
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Hello Freesurfer developers,
1- I want to extract the uncorrected clusters from the uncorrected
significance maps obtained from mri_glmfit for structural data (to
illustrate cluster, size, location, and significance) like
abs.sig.cluster.summary (summ
Hi Meike,
Would it be possible to send us one of the sig.mgh files to inspect?
Thanks,
Ruopeng
On 3/9/20 3:24 PM, Meike Hettwer wrote:
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Dear freesurfer experts,
I am currently running a very basic correlation with two groups
(gender, which I am not inter
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Dear freesurfer experts,
I am currently running a very basic correlation with two groups (gender,
which I am not interested in), age and genetic scores (the latter of
which I am interested in) included in the glm. Atm I am using a DODS
model (0 0 0
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Dear Tim,
The FOV of my T1 series is 256 x 240. Is it the FOV of the T1 series will
affect the process Recon-all? If yes, how would it impact my output results?
Regards
Frank
From: freesurfer-boun...@nmr.mgh.
Have you tried using mri_warp_convert? You can convert from ITK format (ANTs)
to M3Z via:
mri_warp_convert --initk antswarp.nii.gz --outm3z fswarp.m3z --insrcgeom
src.nii.gz
This way you can also specify the missing source geometry information required
for the m3z.
Andrew
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Hi,
I am seeing the following error:
Admins-iMac:XXXneurology$ trac-all -prep -c XXX.24.14Configfile.rtf
Missing }.
Missing }.
}: Command not found.
Missing }.
red255green255blue255: Command not found.
}: Command not found.
Missing }.
}: Command not
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Dear Freesurfer team,
I have done FA quantification in brainstem substructures using two ways and
got slightly different results.
First, I used dMRI Data Analysis Processing Stream with the following steps
(after brainstem segmentation followed by dt_