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Thank you for your quick and positive reply.
Best,
Vincent
From: on behalf of Ruopeng Wang
Reply-To: Freesurfer support list
Date: Wednesday, 25 March 2020 at 16:41
To: Freesurfer support list
Subject: Re: [Freesurfer] Freeview CLI feature
Sure. We’ll add those in.
Best,
Ruopeng
> On Mar 25, 2020, at 6:28 PM, VINCENT KOPPELMANS
> wrote:
>
> External Email - Use Caution
>
>
> Dear FreeSurfer team,
>
> I am currently using FreeView v3.0, Darwin Build Mar 25 2020 00:009:39
>
> Would it be possible to add the
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Dear FreeSurfer team,
I am currently using FreeView v3.0, Darwin Build Mar 25 2020 00:009:39
Would it be possible to add the following features as command line flags to
FreeView?
1) Set opacity for a surface
It is currently only possible via CLI to
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Hi everyone,
I am confused by the two types of registration files: .lta and .dat.
.dat file is simpler and easier to understand. But for the .lta files,
there seems to be no detailed explanation regarding it. Can anyone point
out to me where can I
Ah thanks Tim, I misread. The links on that wiki page are fixed now. Sorry for
the confusion.
Andrew
On 3/25/20, 3:32 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Tim
Schäfer"
wrote:
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I think the problem is not with
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Hello Pierpaolo,
Just sent it to your email. You can email me back directly if you need
something.
- R.On Mar 25, 2020, at 14:34, Pierpaolo Croce
pierpaolo12cr...@gmail.com
wrote:External Email - Use
CautionDear List,I have
followed the virtual
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Dear List,
I have followed the virtual machine setup for virtual box freesurfer
installation.. Starting ubuntu, ask me developers account informations.
Which is the password?
--
Ing. Pierpaolo Croce, PhD.
Institute for Advanced Biomedical
Hi Mason
I can't tell from those images except that it looks reasonable
cheers
Bruce
On Wed, 25
Mar 2020, Mason Wells wrote:
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Hi again Bruce,
I have now installed the relevant libpng packages and have freeview open. The
segmentation doesn’t look
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Hi Bruce,
I get the following error message when I try to load freeview
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer
FSFAST_HOME /usr/local/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
something like
freeview -v $SUBJECTS_DIR//mri/norm.mgz \
-f $SUBJECTS_DIR//surf/?h.white
cheers
Bruce
On Wed, 25 Mar 2020, Mason Wells wrote:
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Hi Bruce,
Thanks for getting back to me. Sorry, but I am not sure I follow what you mean
here.
Could you
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PhD position at the University of Caen (in the Cyceron platform for the
MRI part and in the INSERM 1075-COMETE, Caen, France)
"Can orthostatic intolerance be predicted by an anatomical indicator?"
All the information for the application are here:
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Hi Bruce,
Thanks for getting back to me. Sorry, but I am not sure I follow what you mean
here.
Could you please explain how I would check this?
Thanks again for your help.
Mason
Mason T Wells, MSc
PhD student
School of Optometry and Vision
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I’ve been using mri_glmfit to regress out motion correction parameters and
linear trends and saving residuals in surface space by first generating a QA
matrix for the volume:
mri_glmfit --y ${source_dir}/${r}/${filepat}.${surf}.${hemi}.nii.gz \
Hi Mason
can you confirm that things look ok within FreeSurfer if you look at the
surface over the volume in freeview?
cheers
Bruce
On Wed, 25 Mar 2020, Mason Wells wrote:
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Hello Freesurfer developers,
I am using Freesurfer and SamSrf for
Hi Javier
no, that's not correct, depending on which training set you mean. For the
Bayesian segmentation (aseg) we used 40 datasets distributed in age and
pathology (10 each for young, middle age, elderly and AD).
cheers
Bruce
On Wed, 25 Mar
2020, javier quilis wrote:
External
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Thanks Andrew! I’ll look into these options.
Take care,
Laura
From: "Hoopes, Andrew"
Reply-To: Freesurfer support list
Date: Tuesday, March 24, 2020 at 4:07 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] ERROR - build stamps do not
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Hi,
We have a user trying to use fspalm. I followed all the directions to install,
but are getting an error with the new mri_surfcluster that we were asked to
download with fspalm. Here is the dummy command I ran to replicate the error:
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Thanks for the answer.
I can not open the power point for some reason. Is there any paper where I can
check this? I think the dataset used by freesurfer is in the MNI Average Brain
(305 MRI) Stereotaxic Model and this dataset only use MRIs from
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I think the problem is not with running the version he downloaded, but the fact
that he could not download it, because all download links on the website at
https://surfer.nmr.mgh.harvard.edu/fswiki/mri_deface are dead.
I downloaded mri_deface from
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Thank you very much.
On Tue 24 Mar, 2020, 11:14 PM Hoopes, Andrew,
wrote:
> Hi Koustav,
>
>
>
> My guess is you have not correctly ‘sourced’ freesurfer (made it available
> in your shell environment). Following the ‘Setup & Configuration’ steps in
>
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