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Hello Freesurfers!
I am running a recon-all -long study and one of my subjects is giving me
trouble. The brain segmentation volume for tp2 is greater than tp1. The scans
were taken from the same machine with the same parameters, but the dimensions
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The data will be resampled by FreeSurfer, so as far as I know it should not
make a difference as far as FreeSurfer is concerned.
But if you expect the two subjects to have the same dimensions, and that is not
true, I would still check why that is the
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That error message sounds like you downloaded Linux binaries.
You can check by running 'file ' on them, e.g., if you are in the
directory where the 'mri_surfcluster' file is, run:
file mri_surfcluster
If the output line says something about Linu
Hi Surfers,
Is there anyway to pass the full address of a surface to mri_vol2surf? To
clarify, we are using surfaces that are saved outside /surf/ and we prefer
not to relocate them every time that we want to use mri_vol2surf.
Thanks
___
Freesurfer
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Dear Freesurfer experts,
I continued to go on with my data set using 7.1.0 (with a Catalina MacOS 10.15)
and in more than 10% of subjects recon-all -all failed.
Failures were always at the segmentation stage (as I showed you in a previous
mail) and a
