Re: [Freesurfer] Segmentation of hippocampus and amygdala: using an additional scan with low-pixel

External Email - Use Caution Thank you for your advice! Best regards, Sunah. 2020년 9월 14일 (월) 오후 9:50, Iglesias Gonzalez, Juan E. < jiglesiasgonza...@mgh.harvard.edu>님이 작성: > Dear Sunah, > > I would use the T1 alone. > > Cheers, > > /E > > > > > > Juan Eugenio Iglesias > > Senio

[Freesurfer] Post-Doctoral position available in human neuroimaging and sensory testing at the University of Minnesota School of Dentistry

External Email - Use Caution *POSITION OVERVIEW* The Division of TMD & Orofacial Pain (OFP) at the University of Minnesota School of Dentistry (UMN SOD) is seeking a highly motivated Post-Doctoral Associate in the field of human neuroimaging and sensory testing for an NIH/NIDCR

[Freesurfer] Standard best practices for creating binary GM, WM and CSF masks from freesurfer recon-all output

External Email - Use Caution Hi there I am new to Freesurfer and I would like some help with best practices for exporting binary GM, WM and CSF masks. I have run recon-all (FS v7.1) on some T1w images. I would now like to create binary GM, WM and CSF masks from the recon-all

Re: [Freesurfer] mri_glmfit-sim error CSDs have the same seed

External Email - Use Caution Hi Doug, Here is the command: mri_glmfit-sim --glmdir lh.rs6980093.thickness10.glmdir --perm 1000 2.0 abs --cwp 0.05 --2spaces --bg 4 And here is the output: mri_glmfit simulation done 4.78645 mri_glmfit simulation done 4.806 mri_glmfit simulati

[Freesurfer] recon-all -s BIO-ALS-701-043 exited with ERRORS

Dear Freesurfer Developers, I am working remotely from my Windows notebook through the NoMachine Linux. I have been trying to recon-all without success. Please see below the scripts. Thank you! epimetheus:alz14[994] recon-all -i /autofs/cluster/atassigp/ALSspeech/BIO-ALS-701-043-BL/MPRAGE1/00

[Freesurfer] recon-all -s BIO-ALS-701-005-BL exited with ERRORS

Dear developers, I have been trying to run the recon-all without success. I am working remotely using my Windows laptop through NoMachine Linux. Please see below the scripts and the error message. Thank you. epimetheus:alz14[854] recon-all -i /autofs/cluster/atassigp/ALSspeech/BIO-ALS-701-005-

Re: [Freesurfer] peak MNI coordinates within a masked sig.mgh

External Email - Use Caution Just a follow-up, I got stuck at trying to obtain a mask from binarizing a specific ROI from the aparc+aseg.mgz, aiming to mask my sig.mgh with this ROI.If for instance, I'd like to create a ROI from the left supramarginal gyrus, I found that its label

Re: [Freesurfer] Segmentation of hippocampus and amygdala: using an additional scan with low-pixel

Dear Sunah, I would use the T1 alone. Cheers, /E Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com From: on behalf of ­최선아 / 학생 / 뇌인지과학과 Reply-To: Freesurfer support list Date: Monday, September 14, 2020 at 03:16 To: "freesurfer@nm

[Freesurfer] Download of Freesurfer 7.1.1. and 7.1.0. continuously stalled

External Email - Use Caution Hi all, I have been trying to download freesurfer 7.1.1 on my mac. However, each attempt stalls 1 MB before it is done. I had the exact same problem with version 7.1.0. There should be more than enough space on my external hard drive to install the p

[Freesurfer] Segmentation of hippocampus and amygdala: using an additional scan with low-pixel

External Email - Use Caution Hello FreeSurfer Developers, I am attempting a quality check for my segmentation using an additional scan. My segmentation of hippocampal subfields and nuclei of the amygdala using an additional scan were successfully done. However, I am not sure it is