[Freesurfer] About volumetry results by Freesurfer

External Email - Use Caution Hello, I am a Bioinformatician using Freesurfer for Brain volumetry analysis particularly for clinical usage. I encountered an issue when using Freesurfer for a patient having MRI data at two different time points; The volumes related to some brain si

Re: [Freesurfer] Computing thickness from woT2.pial surfaces {Disarmed}

External Email - Use Caution Hi, Bruce, I did not find any mris_thickness command line option for masking medial wall during thickness computation. The masking of ?h.thickness file ex post would not probably help, since it is not equivalent. I tested this by running mris_anatomi

Re: [Freesurfer] Computing thickness from woT2.pial surfaces {Disarmed}

Hi Antonin Sorry for the trouble. We can add a -mask option to it going forward Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Antonín Škoch Sent: Friday, December 11, 2020 1:16 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Computing thickness from woT2

Re: [Freesurfer] Error in longitudinal pipeline {Disarmed}

External Email - Use Caution Thanks, Kersten. I am sorry, I didn't see your response in the FS blog. I will go through it once and let you know! Once again thanks a lot for your kind mail! With regards Vittal On Thu, Dec 10, 2020 at 6:35 PM Diers, Kersten /DZNE wrote: > Hel

[Freesurfer] asegstats2table

External Email - Use Caution Hello Freesurfers, I have a question about the command asegstats2table. I want to obtain the structural data of a group set based on labels created by myself. I see that this is possible with mris_anatomicalstats for 1 subject but can I obtain the data