Re: [Freesurfer] Recon-all error: MatrixMultiply: m1 is null! {Disarmed}

2020-12-16 Thread Boa Sorte Silva, Narlon
External Email - Use Caution Thanks Andrew! Nárlon Cássio Nárlon Cássio Boa Sorte Silva, PhD CIHR/MSFHR Postdoctoral Research Fellow Aging, Mobility, and Cognitive Neuroscience Lab Djavad Mowafaghian Centre for Brain Health University of British Columbia Twitter: @BoaNarlon On

Re: [Freesurfer] Recon-all error: MatrixMultiply: m1 is null!

2020-12-16 Thread Hoopes, Andrew
Hi Nárlon, Unfortunately, this is a known bug with parallel processing in FS 7.1.1. A fix will make it into the next v7 patch. As you mentioned, this error occurs at random, so in the meantime, you can mitigate this by either: - Rerunning recons until they don’t fail (not recommended)

[Freesurfer] Error During Fix Topology and Brain Usability

2020-12-16 Thread Angel Hammond
External Email - Use Caution Dear Experts, I have a brain that I have been getting an error for during fix topology during recon-all using Freesurfer 6.0 on macOS Catalina. I have read a couple of threads on this same kind of error on the Freesurfer list and it seems this is

[Freesurfer] fspalm error : --sig2p-max unknown

2020-12-16 Thread Marina Fernández
External Email - Use Caution Dear experts, When I was running permutations with fspalm an error appeared because it couldn't find the --sig2p-max option when using mri_surfcluster internally. You can find below the terminal output. How can I fix this error? Thank you in

[Freesurfer] Question about a feature introduced in FS 7.0

2020-12-16 Thread Aaron Tanenbaum
External Email - Use Caution I am curious about a feature introduced in FS 7.0 In the release notes it says, "Ability to freeze the surface at points labeled 247 in the aseg.presurf.mgz" I was interested to know what this feature can do. Do you have any examples of when this