Hi Torkil,
I just sent you a freeview build for profiling via secure file transferl. Can
you run it through valgrind? First please copy it to your freesurfer bin folder
$FREESURFER_HOME/bin. Then run this command:
valgrind --tool=callgrind --dump-instr=yes $FREESURFER_HOME/bin/freeview_prof
L
External Email - Use Caution
Hi gang,
I have downloaded head MRIs of 1000 subjects from ADNI, together with their
FreeSurfer generated aparc+aseg.mgz files. I'm using them in a 3D deep learning
network. These MRIs are 256 x 256 x 256, which is too large for GPU training.
Therefo
Hi Ileana
Have you examined the input to the mri_normalize call? It should be in the log
file. If it looks normal then maybe tar/gzip the subject dir and send it to us?
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Camerino, I.L. (Ileana)
Sent: Tuesday, May 4, 2021 9:
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Dear Freesurfer experts,
I am running recon all on a T1 image that already gave me many problems. After
I solved the last one (adding control points in white matter) I finally got a
new error.
The command I run is: echo "cd $PWD; ./recon_all_sub056.
HI Torkil,
We tested on our CentOS 8 machines as well as CentOS 8 VM but did not notice
any slow-down. I personally run freeview remotely on a CentOS 8 machine
occasionally and have never experience such an issue. I’m at a loss, too. :(
I’m just shooting in the dark now - as I mentioned before,
