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This email was sent 22 hours ago, but somehow it haven't appeared on the
forum yet. I post it again.
Gabor Perlaki ezt írta (időpont: 2021. jún. 2.,
Sze, 12:11):
> The default talairach registration is wrong in ~20% of our subjects and
> thus eTIV is
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Hello,
While installing freesurfer-7.1.1 for centos via rpm
(freesurfer-CentOS8-7.1.1-1.x86_64.rpm) I had the following problem:
/usr/local/freesurfer/7.1.1-1/bin/mcparams2reg is a python script that
use /usr/bin/env python, not fspython which is 3
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Hello freesurfer-7.1.1 installed from rpm on centos8
show_tal tries to call mri_shown a non existing program in
/usr/local/freesurfer/7.1.1/bin
regards
Eric
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subjects.csh is not installed but rebuild_gca_atlas.csh requires it
best regards
Eric
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Le 03/06/2021 à 14:54, Eric Deveaud a écrit :
> External Email - Use Caution
>
> Hello freesurfer-7.1.1 installed from rpm on centos8
>
> show_tal tries to call mri_shown a non existing program in
> /usr/local/freesurfer/7.1.1/bin
tal_co
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Le 03/06/2021 à 13:46, Eric Deveaud a écrit :
> External Email - Use Caution
>
> Hello,
>
>
> While installing freesurfer-7.1.1 for centos via rpm
> (freesurfer-CentOS8-7.1.1-1.x86_64.rpm) I had the following problem:
>
> /usr/local/freesurfer/
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Hello,
freesurfer-centos8-7.1.1 rpm installa in singularity container
Singularity> anatomiCutsUtils -h
/usr/local/freesurfer/7.1.1-1/python/packages/pandas/compat/__init__.py:117:
UserWarning: Could not import the lzma module. Your installed Python i
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Hi Bruce,
I am just following up on this. Were you able to get mri_normalize to run
on this mp2rage data?
Thanks,
Corinna
On Wed, May 5, 2021 at 6:50 PM Corinna Bauer wrote:
> Great, thanks. The nu.mgz is attached.
>
> Corinna
>
> On Wed, May 5, 20
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Le 03/06/2021 à 15:53, Eric Deveaud a écrit :
> External Email - Use Caution
>
> Le 03/06/2021 à 13:46, Eric Deveaud a écrit :
>> External Email - Use Caution
>>
>> Hello,
>>
>>
>> While installing freesurfer-7.1.1 for centos via rpm
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Hello Experts,
I am trying to isolate ROIs using labels #601-#628 however I am getting the
following output and it is the same for each label. Any idea what is wrong here?
Thanks for your help!
Akilas-MacBook-Air:B301001 akilasekar$ isolate_labels.
Hi Diana,
If there are a lot of obvious holes in the surface topology, it might be worth
doing some manual fixing of the white-matter segmentation. The tutorial at
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/WhiteMatterEditsV6.0 walks
through that process.
Best
Andrew
From: DIANA ORT
Hi Marena - If the registration between the diffusion and T1 images is
reasonable, this should work. You should bypass any pathways that lie mostly in
the truncated part of the diffusion scans.
Best,
Anastasia.
From: freesurfer-boun...@nmr.mgh.harvard.edu
on be
Can you try an experiment for me?
cd $SUBJECTS_DIR/subject/surf
cp lh.sphere.reg lh.sphere.reg.auto # make a backup
mris_register -norot -rotate 0 0 +15 -curv rh.sphere
$FREESURFER_HOME/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif
rh.sphere.reg
Then run
recon-all -s subject -autor
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Hi,
how can I perform vertex by vertex (surface) analysis of covariance between
functional connectivity data (FS-FAST) and cortical thickness, regressing out
the effect of groups?
My mean concern is how buid the fsgd file.
Stefano__
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Hello,
I have been manually tracing the entorhinal cortex, dividing it into the
antero-lateral entorhinal and posterior-medial entorhinal cortex. I am looking
for a way to get cortical thickness measures for this region. I have a few
questions relat
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