Re: [Freesurfer] dwi_orig_las issue trac-all -prep

External Email - Use Caution Hi Anastasia and thanks for your reply. Here I have attached trac-all.log. I think I installed the official FS 7.1.1 version and not the beta (not sure btw). Is there a way to get which one that I am using? trac-all.log Description: Binary data __

Re: [Freesurfer] Hippocampal Subfield Definition Errors

External Email - Use Caution I hope this is helpful, thank you! *Franchesca Kuhney, M.A.* *(she/her)* Clinical Psychology Doctoral Student University of Illinois at Chicago Behavioral Sciences Building | Rm 3019 1007 W. Harrison St. | Chicago, IL 60607 - *Electronic Mail is n

[Freesurfer] fsaverage file download

External Email - Use CautionGood afternoon!I would like to ask if there is there anyway that I would be able to redownload just fsaverage to my WSL without redownloading the whole Freesurfer distribution? I was trying to understand how to find the location of the output data for rec

Re: [Freesurfer] recon -all and mri_convert errors

Hi Jamie Where did the original .nii file come from? Seems like something might be wrong with it. Do you have the dicoms it came from you can try? What if you try to visualize the nifty directly? Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Podell, Jamie Sent: Satur

[Freesurfer] recon -all and mri_convert errors

External Email - Use Caution Hi, I am trying to run recon -all on a T1 .nii file and keep running into errors. It says both "No such file or directory" and "bad number of dimensions." Since it seemed to me to be a problem with the .nii file, I tried running mri_convert separate

Re: [Freesurfer] dwi_orig_las issue trac-all -prep

Hi Amir - Are you using the official 7.1.1 FreeSurfer release or a beta version? The config file that you are using seems to be newer than 7.1.1. Please attach your entire trac-all.log file, this will help answer this and other questions. Thanks, Anastasia. Fro

[Freesurfer] Susceptibility Weighted MRI scans

External Email - Use Caution I want Susceptibility Weighted and T1 weighted MRI scans for neurological disorder. Any help how we can get the data. Please help us out. On Sat, 17 Jul 2021, 3:29 pm AmirHussein Abdolalizadeh, < amirhussei...@gmail.com> wrote: > External Ema

[Freesurfer] dwi_orig_las issue trac-all -prep

External Email - Use Caution Dear FreeSufer users/experts, I am trying to do TRACULA (FS 7.1.1) on a subject with b = 0,1000 in 60 directions. The preprocessing steps of denoising, bias-field, eddy/motion correction were done using MRtrix (in .mif format) and their outputs are con