[Freesurfer] Freesurfer version confusion

2021-09-19 Thread Paul, Rahul
Hi freesurfer experts, I was using FreeSurfer v6 for my research. Recently, I started move to FreeSurfer v7.2. I encountered the following issue: Some patients, that had extra large error (xL error), were running fine (recon-all) in freesurfer 6 (it took time, but the process finished, and the

Re: [Freesurfer] Segmentation of thalamic nuclei: LGN volume

2021-09-19 Thread Iglesias Gonzalez, Juan E.
Thanks, Marco. The volume of the LGN in our atlas is ~215mm3. Volume discrepancies with other atlases or manual tracing are common, particularly for such small nuclei with faint contrast (and also due to discrepancies in criteria eg to determine the posterior / medial boundary with the rest of