[Freesurfer] Postdoctoral Position – Pediatric Neuroimage Analysis and Deep Learning

2021-10-28 Thread Gang Li
External Email - Use Caution A postdoctoral research associate position is available in the Department of Radiology and Biomedical Research Imaging Center at the University of North Carolina at Chapel Hill (UNC-Chapel Hill). Our current research focuses on the development of advanc

Re: [Freesurfer] Local GI MRI_segstats error

2021-10-28 Thread COLLEEN PLETCHER
External Email - Use Caution Hi, I tried that and it did not help, I am still getting the same error message. I did not get any errors when originally running the recon-all local GI command Thank you, Colleen From: freesurfer-boun...@nmr.mgh.har

Re: [Freesurfer] freeview segmentation fault: 11 on MacOS 10.15.7

2021-10-28 Thread fsbuild
External Email - Use Caution Hello Emmanuel, You could try the suggestions in this post from last month, https://secure-web.cisco.com/1H6jl_CDKnKsqkQWb-ixQ370LPSa0jmM_IIgqtrwqvBfOr_MUx_C9GKKKDgEZPw7aSb8zfBIBDSpaWvCvcKN6CMkVjPWc2oq9nhdchm-2CQeI5PkVlun_dK0wcM4GhixSf5CPH9LdCfKOHsucbO4

Re: [Freesurfer] same ROI with different stats

2021-10-28 Thread Fischl, Bruce
Hi Wei The DKT and aparc are estimates from folding patterns, based on different neuroanatomist’s conventions. The exvivo ones are based on direct observation of highres ex vivo images where we can see the borders and likely to be more accurate in my opinion. The first one is all vertices that

[Freesurfer] Registering DTI fiber tracts (from MRtrix3) to FreeSurfer registered surfaces.

2021-10-28 Thread Sherin Sugathan
External Email - Use Caution Hi!!, I have a two time point brain dataset of a single patient. The data consists of structural and DTI for both timesteps. I run FreeSurfer on each timestep separately for generating brain surfaces. When I display the brain surfaces(from both times

Re: [Freesurfer] orig/001.mgz to brain.mgz transformation?

2021-10-28 Thread Tim Schäfer
External Email - Use Caution 1) I call the space of brain.mgz and wmparc.mgz the 'conformed' or 'native' space. As opposed to the 'anatomical' space of the raw images, and the 'standard space' (data mapped to fsaverage). I am not sure whether that's the official way though. 2)