[Freesurfer] Tracula error

2021-12-05 Thread Nasiriavanaki, Zahra,M.D.
Hello, I’ve been running the trac-all -prep step and I faced this error: ConvertTransformFile 3 /autofs/cluster/guptagp/zn025/ALD/subjects/1/dmri/xfms/diff2syn0GenericAffine.mat /autofs/cluster/guptagp/zn025/ALD/subjects/1/dmri/xfms/diff2syn0GenericAffine.txt --hm --ras ConvertTransformFile:

Re: [Freesurfer] question about surface registration to an average surface

2021-12-05 Thread Trisanna Sprung-Much
External Email - Use Caution Hi Bruce So I have 77 chimp scans reconstructed in FS (NOT registered to MNI space, but rather a chimp volume template, to avoid scaling). After a lot of trial and error, we got some really nice surfaces. I tried to use make_average_surface this sum

Re: [Freesurfer] question about surface registration to an average surface

2021-12-05 Thread Fischl, Bruce
I'm not really sure what you are trying to do, but I guess you will want to make your own average. I think there is a new script for this, so someone else will have to comment Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Trisanna Sprung-Much Sent: Saturday, December