Re: [Freesurfer] Questions about contrasts

2021-12-12 Thread Douglas N. Greve
The model is actually, two independent linear models: thicknessCU = CUOffset + CUcortisol*CUslope thicknessCI = CIOffset + CIcortisol*CIslope There will be four regression parameters: [CUOffset  CUslope CIOffset CIslope] On 12/9/2021 10:48 PM, Laura Willers de Souza wrote: External Em

Re: [Freesurfer] Error: recon-all exited with ERRORS: failing without generating all surf files: How to modify wm.mgz to make it work?

2021-12-12 Thread Douglas N. Greve
In that case, you should edits the wm.mgz (first web page) to find the big defect. There are not any surfaces at this point because it did not get that far On 12/9/2021 3:53 AM, Sumit Sharma wrote: External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to generate

Re: [Freesurfer] Doubts about analysis of hippocampal subfields and nuclei of the amygdala

2021-12-12 Thread Douglas N. Greve
These two are not mutually exclusive. If you want to perform GLM on the volume measures of each ROI, then the answer is yes. If you want to go a VBM style analysis, then no. On 12/9/2021 9:09 AM, Laura Willers de Souza wrote: External Email - Use Caution Hello FreeSurfer Developers,

Re: [Freesurfer] mri_label2label: one-to-one for subjectNo --> ico

2021-12-12 Thread Krieger, Donald N.
External Email - Use Caution Thanks for getting back on this, Doug. I want to try a few things and make sure I understand what you’ve written before I get back to you. Best – Don From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: Friday, December

Re: [Freesurfer] [External] Re: error in mri_sclimbic_seg

2021-12-12 Thread Zeng, Victor (BIDMC - Keshavan - Psychiatry)
External Email - Use Caution Yup, it worked after removed the back slash. Thanks, Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab -- From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: Friday, Decemb

[Freesurfer] PhD student position in the NCC lab at the European Neuroscience Institute Göttingen, Germany

2021-12-12 Thread Caspar M. Schwiedrzik
External Email - Use Caution The NCC Lab at ENI Göttingen is looking for an outstanding *PhD student (f/m/d)* Specialization: interested in studying face perception and predictive processing in non-human primates Limitation: Appointment until 31.12.2025 Working period: 65 % (25,02