Re: [Freesurfer] Hippocampal segmentation - data processed in different fs version

Yes! As long as you explain it clearly in whatever paper you may write with the results ;-) Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com On Jan 10, 2022, at 23:28, Katarina Vulić mailto:vulic.katari...@gmail.com>> wrote:

[Freesurfer] Hippocampal segmentation - data processed in different fs version

External Email - Use Caution Hello Freesurfer Developers, We have data that has been initially processed by Freesurfer v6.0.1. Is it ok if we run hippocampal subfield segmentation (

Re: [Freesurfer] Trac-all -prep -c error

External Email - Use Caution Thank you for constantly improving TRACULA. I believe we don't have reverse polarity scan or a field-map. We might be able to acquire the field-map though since the MRI has been acquired locally. Having that in mind, and just for clarification and

Re: [Freesurfer] Spatial distance between regions

External Email - Use Caution Hi Doug Thank you, worked as a charm! I was wondering if I can apply this code on other atlases, for example I have the schaefer atlas (in MNI152) space. Can I just run the mri_segcentroids on the schaefer as input to extract the centroid coordinates

[Freesurfer] mri_info orientation string ???

External Email - Use Caution Dear Freesurfer Experts, I have a question regarding the orientation string gotten from mri_info. When I apply mri_info command to a DIOM series I generated programmatically, I get the "???" result, and hence primary slice direction is also unknown:

Re: [Freesurfer] Ventricle segmentation issue - ventricle mislabeled as white matter

External Email - Use Caution Hello all, Apologies for the delay in response! For the applications in my group's work, we are looking at ventricular volume, as well as white matter volume. To that degree, we are interested in whether there are any processing steps earlier in