[Freesurfer] Contrasts 3 groups 4 covariates

2022-02-19 Thread fernanda rohrsetzer
External Email - Use Caution Hi guys, I'm a beginner in Freesurfer and I want to perform an analysis of the difference between 3 groups in cortical thickness,volume and area having age, mean thickness and etiv as covariate. my design matrix for 3 groups comparison as "1 -1 0 0

Re: [Freesurfer] Question glm analysis g4v0

2022-02-19 Thread Douglas N. Greve
The value = (CU cortisol low - CU cortisol high) - (CI cortisol low - CI cortisol high), so whatever that sign means. BTW, you are supposed to decide the sign for a singed test *before* you look at your data. On 2/18/2022 2:39 PM, Laura Willers de Souza wrote: External Email - Use

[Freesurfer] Running recon-all in parallel error: cannot find sub-101_ses-BL_T1w.nii

2022-02-19 Thread Yuan, Ye
External Email - Use Caution Dear FreeSurfer Developers, I hope this email finds you well. I'm an MRes student from Imperial College London. I'm attempting to run recon-all in parallel, as described in the FreeSurfer tutorial of Andy's brain book: