Re: [Freesurfer] Freeview problem - can't see surfaces, hidden behind volumes

2022-02-20 Thread Harriet Dempsey-Jones
External Email - Use Caution Hi Ruopeng, My apologies – I am not completely across all the details of my remote machine access and a bit unfamiliar with the terminology. I have attached below details of how I connect to the remote windows machine from my mac. I first open a VPN

Re: [Freesurfer] Linux Novice (VM_67 root vs. developer permissions)

2022-02-20 Thread fsbuild
External Email - Use Caution Hello Randy, You can set SUBJECTS_DIR (via export command) to point a directory, e.g., where you have write permission.  You always have permission to write to your home directory, which in the VM is the path /home/developer.  The home directory path

Re: [Freesurfer] sulc surface error: unit mismatch between FreeSurfer 5.3.0 and 6.0.1

2022-02-20 Thread Fischl, Bruce
Hi Francisco My guess is that some of the versions you are using outputted the raw sulc (in mm) and some z-normalized it. So you can either take all your sulc files and z-normalize them, or rerun mris_inflate on all your subjects and give it the flag -mm You can also add -sulc So you don’t o

[Freesurfer] sulc surface error: unit mismatch between FreeSurfer 5.3.0 and 6.0.1

2022-02-20 Thread Guerreiro Fernandes-3, F.D. (Francisco David)
External Email - Use Caution Dear FreeSurfer Developers, I'm attempting to correlate the sulcal depth information present in the ?h.sulc files with activation in particular brain regions during an overt language task in an fMRI paradigm. For this matter, a dataset was gathered