[Freesurfer] Seeking pass code

External Email - Use Caution Hi there, I am hoping to access the pass code required to open my .ova.7z file as a 7zip file. Thank you in advance for your assistance, Felicity Simpson, University of Newcastle, ___ Freesurfer mailing

Re: [Freesurfer] samseg2recon error / missing files

External Email - Use Caution Good evening Doug, Thank you for the clarification. All the best, Jacob From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: Wednesday, June 1, 2022 8:22 AM To:

Re: [Freesurfer] fmcpr.up.sm5.mni305.2mm.nii.gz label

If all you want is the mean time course from hippocampus, there is an easier/better way, eg First, create a configuration that describes the ROI you want, eg, fcseed-config -segid 17 -fcname L_Hippo.dat -fsd bold -mean -cfg mean.L_Hippo.config This is done once regardless of how many subjects

Re: [Freesurfer] extracting BAs in freesurfer

Unfortunately, not. We don't have ex vivo labels for those areas :( On 6/1/2022 4:41 PM, Sam W wrote: External Email - Use Caution Hello! Is it possible to extract brodmann areas not included in the aparc? For example, BA9, BA10 and BA32? Thanks! Best regards, Sam

[Freesurfer] extracting BAs in freesurfer

External Email - Use Caution Hello! Is it possible to extract brodmann areas not included in the aparc? For example, BA9, BA10 and BA32? Thanks! Best regards, Sam ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] fmcpr.up.sm5.mni305.2mm.nii.gz label

External Email - Use Caution Dear freesurfer expert: I use freesurfer to preprocess the fmri signal. It generates three final files: fmcpr.up.sm5.fsaverage.lh.nii.gz, fmcpr.up.sm5.fsaverage.rh.nii.gz, and fmcpr.up.sm5.mni305.2. However I want to extract the subcortical area

Re: [Freesurfer] Surface normalization

What do you  mean by the "total wm measurement"? Total wm volume? If you are worried about different head sizes, then yes On 6/1/2022 7:14 AM, Rafael Navarro wrote: External Email - Use Caution Hello Dr. Greve,  I am normalizing the cortical SurfArea features from both

Re: [Freesurfer] HRF with derivatives: results

It uses the default parameters:   tau1 = 1;   tau2 = 1;   ttp1 = 5*tau1;  % 6 %   ttp2 = 15*tau1; % 16 %   c  = 1/6; On 6/1/2022 4:27 AM, Laura Doll wrote: > External Email - Use Caution > > Hi Doug, > > Thanks for your hint where to find the actual function. > But how can I find

Re: [Freesurfer] Surface normalization

External Email - Use Caution Hello Dr. Greve, I am normalizing the cortical SurfArea features from both ?h.aparc.stats with the total white matter surface, calculated as the sum of the total of the two hemispheres. I checked my results and after applying a t-test I saw the

Re: [Freesurfer] HRF with derivatives: results

External Email - Use Caution Hi Doug, Thanks for your hint where to find the actual function. But how can I find which values were used in my analysis? I.e. the input to this function? Best, Laura Am Dienstag, 31. Mai 2022 17:19 CEST, "Douglas N. Greve" schrieb: > Look

[Freesurfer] Now accepting applications for MSc Applied Neuroscience at Royal Holloway, University of London

External Email - Use Caution **APPLY NOW FOR MSC APPLIED NEUROSCIENCE IN ONE OF HIGHEST RATED PSYCHOLOGY DEPTS IN THE UK** MSC APPLIED NEUROSCIENCE - Department of Psychology, Royal Holloway, University of London * You can gain a unique insight into the ways that