[Freesurfer] infant freesurfer crash

2022-07-01 Thread Knut J Bjuland
External Email - Use Caution I am able to run infant freesurfer on my local pc but when I run on a cluster I get segmentation error when running sscn_skullstrip. Segment error in $ sscnn_skullstrip -i /cluster/projects/nn9208k/007_fs/work/mprage.nu.conf.nii.gz -o

Re: [Freesurfer] Problem with sxconcat-sess

2022-07-01 Thread Shapiro, Noah Lorenz
Hi Paul, The PCC_BOLD is just a directory name used for the analysis. Please find the dof attached. Thanks for your help. Best wishes, Noah From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Wighton, Paul Sent: 30 June 2022 17:36 To: Freesurfer

[Freesurfer] help troubleshooting lta_convert error

2022-07-01 Thread Megan Schendel
External Email - Use Caution Hi all, I had a working distribution on an old system a few weeks ago, but now I'm getting an error. Can anyone offer any troubleshooting ideas? I am working on a shared server with a freesurfer distribution that I own. Here is some system info: