Re: [Freesurfer] [TRACULA] Auto-BIDS Config Variables Question

Hi Steven - Indeed you are right that the values from your scanner protocol are the ones to use. In this case it sounds like what it finds in the json files does not agree with the scanner protocol, and this is good to know. I will look into this. Glad to hear it worked well otherwise!

Re: [Freesurfer] Interpretation of intergroup comparisons

External Email - Use CautionHello Dr. Greve, Please see attached the fsgd and contrast files. I would like to know how to interpret the max value and its directionnality. For example, for this contrast : g2v1_CN_AD_NPIDSEV.area.lh.fwhm10_group-x-var_neg, does the negative sign of

Re: [Freesurfer] Rookie question

I have a rookie question regarding free surfer after going through the excellent course on youtube First time I know the free surfer does the reconstruction on the anatomical scan (eg., T1t1_mprage_sag_p2_iso.nii) I see 3 other files in my data that were never used in the tutorials

[Freesurfer] Password for unzipping .7z file of virtual image

External Email - Use Caution Hi FreeSurfer-Team, I hereby request the password for unzipping the FS_7_2_0_Ubuntu_18_04_06.ova.7z file. Thank you in advance! Best regards, Nicolas Weilguny ___ Freesurfer mailing list

[Freesurfer] Problem with labels

External Email - Use Caution Hello Freesurfer Team, I am trying to use a ROI to create a label into fsaverage. Once I registered my ROI to the fsaverage space I performed a mri_vol2surf and mri_cor2label to obtain a label of the ROI on the fsaverage surface. However, this label