Re: [Freesurfer] Freeview Closes Unexpectedly

External Email - Use Caution Hi, To make sure, can you send me the instructions on how to download the FS license file? On Fri, Jul 22, 2022 at 1:31 AM Wang, Ruopeng wrote: > Have you install the FS license file properly? Another thing to check is > to make sure you have

[Freesurfer] Understanding ?h.sphere.reg

External Email - Use Caution Dear freesurfer experts, I was wondering if ?h.sphere.reg files have any coordinates in space tagged to them? What I actually mean is I'm using TRACULA which itself use the following files from mri and surf folder (all created by running recon-all

Re: [Freesurfer] Tracula error in path construction

Could be that you reached a memory limit? If the same analysis runs fine on your computer, then it's probably a cloud issue, not a TRACULA issue. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Shanika Jayakody Sent: Thursday, July 21, 2022 3:58 PM

Re: [Freesurfer] Freeview Closes Unexpectedly

Have you install the FS license file properly? Another thing to check is to make sure you have granted freeview permission to access your disk files. You can check it in the system preferences. Ruopeng On Jul 21, 2022, at 12:31 PM, user2038...@gmail.com wrote:

[Freesurfer] Tracula error in path construction

External Email - Use Caution Dear Anastasia I am running tracula on FreeSurfer 7.2. It worked fine on a linux computer now I am changing to a Cloud workstation. Attached is my Configuration file. For this person the pipeline worked without errors until path reconstruction but

Re: [Freesurfer] Recon All

External Email - Use Caution Dear Sir, As I have got the features file from free surfer recon all, of AD, CN, and MCI. I want use ML techniques for the detection of those three classes. Is it possible to do with ML techniques. Initially I have tried through certain Algorithms but

[Freesurfer] Freeview Closes Unexpectedly

External Email - Use Caution Hi, When I try to open any files in Freeview on a MacBook, the application closes unexpectedly. I only receive a message from Apple that says "Freeview quit unexpectedly" but gives no reason. This happens after I open the application and try to load a

Re: [Freesurfer] Screenshots in Freeview within a container

If you have the x virtual frame buffer installed, you can run freeview via fsxvfb and it will write your screen shots to a file without bringing up an image (thus the virtual frame buffer). This is available in 7.3 On 7/20/2022 12:40 PM, Garikoitz Lerma-Usabiaga wrote: External

Re: [Freesurfer] volume group analysis

The sig.table.dat has the sig values in it (ie, -log10(p)*sign). The gamma.table.dat will have the contrast values. These are NOT percentages but have the units of the input y table. On 7/20/2022 9:18 AM, Carolina Ferreira wrote: > External Email - Use Caution > > Hi, I'm using the

Re: [Freesurfer] Cortical Parcellation stats

Why not just add the volumes across the hemis? On 7/19/2022 9:38 PM, Mohanad Arafe wrote: External Email - Use Caution Hello, I am attempting to measure the gray matter volume (mm^3) of the insula. After getting all of my labels, I performed the following operations to merge the

Re: [Freesurfer] Pial surface edits question

That is pretty small, at least in that picture. It could be that they are not really overlapping as freeview has to project the surfaces into the plane and that brings some inaccuracies with it. If they are really overlapping, it is so small that I would not worry about it. On 7/19/2022 1:35

Re: [Freesurfer] aseg.presurf edits are undone or incomplete when brainmask.mgz edits are involved

No, not yet. Maybe next week. On 7/18/2022 10:46 AM, Keefe, Sarah wrote: External Email - Use Caution Hi, Following up on this - has anyone had a chance to look at it? Looking at my sent emails in this thread and the quoted text in them, I'm not 100% sure my previous email went

[Freesurfer] VM password request

External Email - Use Caution Hi, I am trying to unzip the VM image. Could you please send the current passwort. And two additional questions: 1. are there plans to provide a docker v7.3 image in the near future? 2. are there plans to include freesurfer's subcortical