You only need to specify path names if you don't want to reconstruct all 42
paths. But from the list, it looks like you want all 42 paths, so you don't
need to specify anything. Skip all of those lines and you'll get the default
behavior.
From: freesurfer-boun...
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Hi Alan,
In your pathlist, the 1st path is acomm. You have "ac" in your file.
Change ac to acomm and you should be good to go.
Best,
King-Wai
On Fri, Aug 5, 2022 at 4:23 PM Alan Francis
wrote:
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>
> Hi King-Wa
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I want to segment registered PET to T1 MRI to 45 subcortical regions as the
regions in aseg.stats of MRI.
I used mri_segstats --seg MRI-floder/mri/aparc+aseg.mgz --reg
Pet2T1.register.dof12.lta --sum petsuv.segstats.dat --i PET-SPM.mgh
--ctab-default
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Hi King-Wai -
First of all, thank you so much for taking the time to investigate my RC
file. I made the changes that you suggested, but the error keeps coming up.
I have attached the file.
Thanks again,
Alan
On Fri, Aug 5, 2022 at 2:03 PM King-Wai
You don't need all that stuff. You should remove everything below the bvalfile
line and use the default parameters.
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Alan Francis
Sent: Friday, August 5, 2022 2:34 PM
To: Freesurfer support list
Subject:
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Hi Alan,
They still don't match.
See attached excel file.
Best,
King-Wai
On Fri, Aug 5, 2022 at 2:35 PM Alan Francis
wrote:
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> Hello King-Wai -
>
> I made the change to the ncpts. But still an error message
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Hello King-Wai -
I made the change to the ncpts. But still an error message persists.
ERROR: length of pathway list (ac cc.bodyc cc.bodyp cc.bodypf cc.bodypm
cc.bodyt cc.genu cc.rostrum cc.splenium mcp lh.af rh.af lh.ar rh.ar lh.atr
rh.atr lh.cbd rh.c
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Thank you King-Wai.
On Fri, Aug 5, 2022 at 11:29 AM King-Wai Chu wrote:
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> Hi Alan,
>
> Your pathlist and "Number of path control points"(ncpts) don't match.
> You have more than 3 paths in the pathlist and onl
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Hi Alan,
Your pathlist and "Number of path control points"(ncpts) don't match.
You have more than 3 paths in the pathlist and only 3 numbers in ncpts.
Best,
King-Wai
On Fri, Aug 5, 2022 at 10:53 AM Alan Francis
wrote:
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Good morning Anastasia -
I made the changes you suggested and removed "extraneous" commands. But the
error message still persists. Could you please shed some light on this?
Attached - latest RC file.
The error message is : unmatched ' " '
Thank you
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