[Freesurfer] FreeSurfer 7.3.2 officially released

Hi, at long last we have an official release of 7.3. See the release notes can be found here: https://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes and also copied below. Thanks to all who tested the beta version. best doug * Bug fix when converting diffusion tensor data with a negative d

[Freesurfer] accumbens nucleus volumes

External Email - Use Caution The accumbens nucleus is very difficult to delineate in some younger (3yo) subjects and in infants run through the infant pipeline. The pipelines segment the region but I'm not sure how reliable the volume measures are. Can the accumbens volume be i

Re: [Freesurfer] segmentation of thalamic nuclei: possibility of generating connectome

Hi Lauren - What you want is to replace the thalamus labels in aparc+aseg.mgz with the thalamic nuclei labels. This is a bit less straightforward than it may first seem because the outer boundaries of the thalamus in the two segmentations are not necessarily the same. However, we've implemented

[Freesurfer] segmentation of thalamic nuclei: possibility of generating connectome

External Email - Use Caution Hello FreeSurfer Developers, I am trying to generate a connectome in MRtrix3 using FreeSurfer parcellations and segmentations. I am specifically interested in the subregions of the thalamus and noticed that the newest version of FreeSurfer (7.3.1) ha

Re: [Freesurfer] Tracula Config file.

External Email - Use Caution Thank you Anastasia and King-Wai. On Fri, Aug 5, 2022 at 4:12 PM Yendiki, Anastasia wrote: > You only need to specify path names if you don't want to reconstruct all > 42 paths. But from the list, it looks like you want all 42 paths, so you > don't n