[Freesurfer] confirmation of processes/commands used in full processing pipeline

External Email - Use Caution Dear FreeSurfer experts, I hope this email finds you all doing well. I'm a second-year doctoral student (and beginner FreeSurfer user) trying to use FreeSurfer to segment gray and white matter in 90 T1 images of children/adolescents (with reading

[Freesurfer] Vanderbilt University HBCD postdoc opportunity

External Email - Use Caution Dear FreeSurfer subscribers, The HBCD site at Vanderbilt University (Nashville, TN) is taking applications for a postdoctoral fellow in developmental neuroscience. Please see the below posting. Feel free to forward to anyone you know who might be

[Freesurfer] Longitudinal PET analysis

External Email - Use Caution Hello Freesurfer developers, I am interested in analyzing PET data following a longitudinal design. I have co-registered each PET image to the closest MRI in time processed through the longitudinal stream. I have sampled each co-registered PET image

Re: [Freesurfer] White matter normalization

External Email - Use Caution Thank you very much for the follow up. I have attached the recon-all.log once again for your kind review Hello James, I apologize that your message containing the log file got rejected. Can you please re-send it? I will manually approve it so

[Freesurfer] NIH/NIDA-Funded Postdoc in Developmental Neuroscience (Penn State)

External Email - Use Caution We are seeking a qualified Postdoctoral Scholar with expertise in human magnetic resonance imaging (MRI) with developmental cohorts to work on a study of the impacts of food insecurity on reward neurobiology in children (8 – 10 years old). This

Re: [Freesurfer] White matter normalization

Hello James, I apologize that your message containing the log file got rejected. Can you please re-send it? I will manually approve it so your conversation with Doug can continue. Liam Sennott From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of James Brown Date: Friday, September

Re: [Freesurfer] forcing use of ants-n3 with FS 7.2

Yes, I think so, but look through the recon-all.log file to confirm that it is using N3 and not N4 as I vaguely remember some issue that it would not run N3, but maybe I'm misremembering. On 9/16/2022 11:50 AM, Alexopoulos, Dimitrios wrote: External Email - Use Caution Just want to

Re: [Freesurfer] Specifying contrasts for an unbalanced design

Yes, that all looks correct. Good job on a complicated design! On 9/19/2022 12:32 PM, Trolle, Carl wrote: Dear FreeSurfer team, We are investigating if there is a difference in cortical thicknesses between persons with a condition and controls, regressing out the effect of site, sex, age,

[Freesurfer] password

External Email - Use Caution Dear administrator I downloaded the FS_7_2_0_Ubuntu_18_04_06.ova.7z file to run with Oracle virtual box but I need the password to open the file. I will be grateful if you send me the password. Thanks in advance ADDRESS: Nail BULAKBASI, M.D.