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1. Sigma is the smoothing kernel applied to the bias field so you can make
it pretty large depending on how high frequency your bias field is (typically
defined by the size of your receive coils)
2. min_dist specifies the minimum distance from the surface a voxel must be
for it to be consi
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The Faculty of Psychology at TU Dresden, Germany, invites applications for the
Chair (W2) of Biopsychology to be filled on April 1, 2024.
TU Dresden is one of eleven German Universities of Excellence. The Faculty of
Psychology currently has eightee
Hi Caspar
Usually that means the lh.smoothwm and the lh.sphere.reg don't have the same
topology (number of vertices,edges and triangles), frequently caused by one of
them having been recreated and the other not. Run mris_info on them and see if
they match
Cheers
Bruce
From: freesurfer-boun...
my guess is that your subject is out-of-sync, ie, maybe you edited it
and reran part of it (eg, autorecon2) but not all of it (eg, autorecon3)
Try looking at the time stamps and or running vno_match_check
On 9/27/2022 3:10 AM, Caspar Schwiedrzik wrote:
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Hi
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Dear Dr Greeve and Dr Fiscle,
I am grateful to you guiding me through this. Indeed, I can see in
recon-all.log how Freesurfer 7.3.2 is normalizing the Flair images. *it
uses the command below:*
I tried to run the previous command without the flag -su
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Hi!
I am having issue with mris_ca_label while trying to apply the Yeo 2011 atlas
to single subject surfaces.
Specifically, I am getting "surface doesn't match" from mrisReadTriangleFile
and "could not read spherical coordinate system" from mris_ca_l
