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Hi Freesurfer scholars,
The output of recon-all "aseg.stats" file contains information on volume
and intensity statistics of each segmentation of subcortical brain regions.
May I ask what is this intensity measurement (e.g. intensity mean)? How is
it d
Hi, I need to unpack dcm files to my local workstation via dcmunpack command.
Is it possible to install this command on my local workstation?
Best,
Albert
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https://mail.nmr.mgh.harvard.edu/mailma
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Hi,
Our lab has previously used Freesurfer version 6, but we are interested in
upgrading to 7.3.2. What are pros and cons for the different versions?
I did not set the computer up or download the original version 6. We were
previously using the Cent
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Realized I sent this to the support list not back to you! But it says
"command not found" when I run 3dvolreg and 3dvolreg.afni
On Wed, Oct 26, 2022 at 7:24 AM Douglas N. Greve
wrote:
> What happens when your run 3dvolreg.afni by itself (no options)
Hi Padma,
You can use the --like flag of mri_convert to convert the output of the skull
stripping back to the dimensions of the original file
https://surfer.nmr.mgh.harvard.edu/fswiki/mri_convert
e.g
mri_convert --like input-to-skullstrip.mgz output-from-skullstrip.mgz
skullstripped_orig_dims
Hi Padma,
There is probably a 'cleaner' way to do this, but this should work:
cat aseg.stats |grep -v '#'|sed 's/ \{1,\}/,/g'|sed 's/^,//'|sed 's/,$//' >
aseg.csv
-Paul
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of priya padma
Sent: Wednesday, Oc
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Dear Team,
I tried using freesurfer for skull stripping and I got results all of size
256X256X256 but the original data size is different, it's 512X512X537.
Is there any way to bring back the original size in freesurfer?
Any help would be appreciated.
