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Dear Freesurfer expert:
After I used ' fcseed-config' to get wm.dat and csf.dat, how could I get
the signal of each voxel that regresses out the nuisance. I do not want to
do the analysis. I just want to get the signal after regressing out
nuisance.
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Hi all,
I am in a similar boat to Rahul and would like to teach myself more about
neuroimaging, specifically, for my PhD I would like to determine a brain
age gap (possibly using HCP/UKbiobank to train my model etc).
A colleague has recommended using
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Hi there!
I recently tried downloading the freesurfer virtual machine but upon opening
the download it asks for a password and I was wondering if that is something
you can provide me with or where I can obtain it.
Thank you very much!
Best,
Hi Rahul,
There is are a lot of resources on the "Teach Youself FreeSurfer" page
https://surfer.nmr.mgh.harvard.edu/fswiki/TeachYourselfFreeSurfer
-Paul
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Rahul Sharma
Sent: Tuesday, December 6, 2022
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Hello everyone, I am very new to this neuroimaging and belongs to technical
background. Could anyone provide me any source or material for
understanding MRI scans and the neuroimaging tools such as Freesurfer or
FSL. Eagerly waiting for your reply.
Senior Research Technologist - (3220849)
Background
The Senior Research Technologist will perform duties in structural and
functional magnetic resonance imaging at the Massachusetts General Hospital
Stroke Research Center and the Athinoula A. Martinos Center for Biomedical
Imaging. The
Oh that's perfect, thanks Bruce!
-Paul
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Fischl, Bruce R.,PHD
Sent: Tuesday, December 6, 2022 12:06 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] FreeSurfer equivalent to fslsplit?
I think
I think mri_convert can take a frame number. Something like:
mri_convert -nth 0 image.nii frame0.mgz
mri_convert -nth 1 image.nii frame1.mgz
.
.
.
Although that means you have to know how many frames are in the original file
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Wighton,
Hey FreeSurfer aficionados,
Is there a FreeSurfer equivalent to fslsplit? If I have a 4d nifti, is there a
way to split that into a set of 3d niftis from the command line?
Thanks,
-Paul
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