[Freesurfer] SynthSR and SynthSeg

2022-12-14 Thread Yoonho Hwang
External Email - Use Caution Dear FS developers, Hi, I'm Yoonho. I know that new features, such as SynthSeg, SynthStrip, segment_subfields (beta version), etc, based on deep learning have been added after the FreeSurfer 7.3.2. Here I have questions (I read papers related to

Re: [Freesurfer] Freeview quit unexpectedly

2022-12-14 Thread fsbuild
External Email - Use Caution Please try the following: 1) Open a new terminal window and run the bash shell as, $arch -arm64 /bin/bash 2) set FS_LICENSE to point to your license.txt file. Say it is in your home directory, e.g., $HOME/license.txt. It can be anywhere but you just

[Freesurfer] Freeview quit unexpectedly

2022-12-14 Thread Addison, Reuben
I am trying to use freeview to load a volume. I am using freesurfer 7.3.2 on the new M1 mac pro with ios ventura. Please view below the error report I am getting. Is there any work around it? I have tried different volumes but same issues Translated Report (Full Report Below)

[Freesurfer] VM password

2022-12-14 Thread r ll
External Email - Use Caution Hello! Could I request for password to unzip ova.7z file: FS_7_2_0_ubuntu_18_04_06.ova Thanks, Rebeca ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] create a mgz with one value

2022-12-14 Thread Aaron Tanenbaum
External Email - Use Caution Hello, I am trying to generate a mgz with identical header and dimensions as another mgz file. However I would like all voxels to be set to one value. What is the best way to do this? Thank you ___

Re: [Freesurfer] ERROR: cannot find or read transforms/talairach.m3z

2022-12-14 Thread Huang, Yujing
Hi Rauf, Can you try adding '-careg' to recon-all command line - "recon-all -autorecon2 -subjid $SUBJECTNAME -careg"? Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of ANWAR Rauf Sent: Wednesday, December 14, 2022 9:43 AM To: freesurfer@nmr.mgh.harvard.edu Subject:

[Freesurfer] ERROR: cannot find or read transforms/talairach.m3z

2022-12-14 Thread ANWAR Rauf
External Email - Use Caution Hi I am creating the source model using the tutorial of Fieldtrip. The part of activity involves using freesurfer, I get the error after running the command recon-all -autorecon2 -subjid $SUBJECTNAME And the error is given as reading transform

[Freesurfer] Password

2022-12-14 Thread Fabien Rech
External Email - Use Caution Hello I have downloaded the virtual machine FS_7_2_0_Ubuntu_18_04_06.ova.7z