Re: [Freesurfer] more detailed instructions for cloning voxels & confirmation that the cloning worked

2023-03-03 Thread Harriott, Emily M
External Email - Use Caution Dear Dr. Nolan, Thank you so much for your help; I really appreciate it. I’m currently using a heat color map for brainmask.mgz and the grayscale color map for T1.mgz. After shading (step 4), should I expect to see the newly cloned voxels (perhaps

Re: [Freesurfer] Request for Consent to Use Derivative Work for Commercial Use

2023-03-03 Thread Douglas N. Greve
Hi Zuha, I'm not the person who can give permission. I think the license allows you to use the software in the way that you are describing. I'm cc'ing Heonick Ha, one of the MGH licensing lawyers, who should be able to tell you definitively. best doug On 3/3/2023 3:30 AM, Zuha Junaidi wrote:

[Freesurfer] Apply a nonlinear transform to a surface.

2023-03-03 Thread Aaron Tanenbaum
External Email - Use Caution I am working on a project that will involve applying nonlinear work to a freesurfer surface. This project is in its infancy. I have not figured out all the details. The nonlinear transform will be in either FNIRT or ANTS format. Does anyone know how

Re: [Freesurfer] Apply a nonlinear transform to a surface.

2023-03-03 Thread Glasser, Matt
External Email - Use Caution You can do this with wb_command. Dunno if FreeSurfer offers this. Matt. From: on behalf of Aaron Tanenbaum Reply-To: Freesurfer support list Date: Friday, March 3, 2023 at 7:26 PM To: Freesurfer Subject: [Freesurfer] Apply a nonlinear transform

Re: [Freesurfer] Apply a nonlinear transform to a surface.

2023-03-03 Thread Aaron Tanenbaum
External Email - Use Caution I think that only works for gifti files. I need it in freesurfer coordinates. Thank you for responding. On Fri, Mar 3, 2023, 7:30 PM Glasser, Matt wrote: > External Email - Use Caution > > You can do this with wb_command. Dunno if FreeSurfer

[Freesurfer] To freesurfer

2023-03-03 Thread Kanokwanwijit Wongsook
External Email - Use Caution Dear Freesurfer My name is nan from Thailand and I’m interest in Freesurfer software but I can’t learn from the begin by myself. I’m confused. so please, can you ad rise me in the begin point of this Freesurfer or some course to learn.Thankyou Sinc

Re: [Freesurfer] Apply a nonlinear transform to a surface.

2023-03-03 Thread Glasser, Matt
External Email - Use Caution You can use mris_convert between the formats. Matt. From: on behalf of Aaron Tanenbaum Reply-To: Freesurfer support list Date: Friday, March 3, 2023 at 8:59 PM To: Freesurfer support list Subject: Re: [Freesurfer] Apply a nonlinear transform to a