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On Tues, 6 April 2023, YaHui Wei wrote:Hello freesurfers, I found the
?h.inflated and ?h.inflated.nofix and found they had a large offset from the
volume. The image below shows the volume, ?h.smoothwm and ?h.inflated.
How can I solve this
You do not need to re-run; all 7.X are designed to give the same answer
on automatic processing.
On 4/4/2023 6:03 PM, Lauren Stephens wrote:
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Hello,
We have been using Freesurfer v7.1.1 to process our data. We want to
update to the v7.3.2. Can we
What is h.all.suvr.sm05.proj0.5.nii.gz? Where did it come from? The name
looks like it might be a voxel-wise map, but you say something about
ROIs. mri_glmfit does not correct for multiple comparisons. For
ROI-based analyses, you can use bonferroni or FDR. For maps you can use
mri_glmfit-sim.
If you know what the vertex number is, you can do something like
mri_volsynth --dim-surf fsaverage/surf/lh.white --pdf delta --delta-crsf
vertexno 0 0 0 --o delta.mgh
mris_fwhm --i delta.mgh --o delta.sm3.mgh --s fsaverage --hemi lh
mri_binarize --i delta.sm3.mgh --min 0.5 --o delta.sm3.bin.mgh
Hmmm, trying mri_convert file.nii.gz file.mgz
Then give file.mgz to synthstrip. I thought it would work with nifty, but maybe
not?
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Salil Soman
Sent: Wednesday, April 5, 2023 8:11 PM
To: free surfer
Subject: [Freesurfer] synthstrip
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Hi,
I am passing synthstrip an nii.gz file, and it keeps giving the error
"ValueError: cannot determine file format from extension for test " (full
error below). Any suggestions on how to fix this issue? The nifti files was
made from dicom images
How about unchecking the “Up to unlabeled” option?
On Apr 4, 2023, at 6:04 AM, Dilara Erişen
mailto:dilara.eri...@gmail.com>> wrote:
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Hi,
I want to create ROI labels by dividing the activation cluster from functional
localizer scan into visual areas. I
Dear Freesurfer Team,
The help of dcmunpack says it will ignore scout scans. Is there perhaps a
hidden flag to avoid that behavior? We are running multiple scouts throughout a
session to combat head motion. Getting those images along the rest would allow
visualizing that motion offline.
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Hi,
Does Freesurfer / Tracula provide any way to automatically segment a tract
between two arbitrarily selected points?
Christian
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